Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF414

Experiment: Ying_Nucleobase14 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF412 and GFF413 are separated by 34 nucleotidesGFF413 and GFF414 are separated by 34 nucleotidesGFF414 and GFF415 are separated by 9 nucleotides GFF412 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 80,491 to 82,287 GFF412 GFF413 - FIG00581832: hypothetical protein, at 82,322 to 82,759 GFF413 GFF414 - Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 82,794 to 85,193 GFF414 GFF415 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 85,203 to 86,411 GFF415 Position (kb) 82 83 84 85 86Strain fitness (log2 ratio) -2 -1 0 1at 81.814 kb on + strand, within GFF412at 81.814 kb on + strand, within GFF412at 81.815 kb on - strand, within GFF412at 81.815 kb on - strand, within GFF412at 81.815 kb on - strand, within GFF412at 81.815 kb on - strand, within GFF412at 82.063 kb on + strand, within GFF412at 82.063 kb on + strand, within GFF412at 82.064 kb on - strand, within GFF412at 82.097 kb on - strand, within GFF412at 82.162 kb on + strandat 82.163 kb on - strandat 82.163 kb on - strandat 82.192 kb on + strandat 82.192 kb on + strandat 82.192 kb on + strandat 82.285 kb on + strandat 82.469 kb on + strand, within GFF413at 82.469 kb on + strand, within GFF413at 82.617 kb on - strand, within GFF413at 82.658 kb on + strand, within GFF413at 83.023 kb on - strandat 83.023 kb on - strandat 83.023 kb on - strandat 83.106 kb on + strand, within GFF414at 83.106 kb on + strand, within GFF414at 83.157 kb on - strand, within GFF414at 83.251 kb on - strand, within GFF414at 83.445 kb on + strand, within GFF414at 83.445 kb on + strand, within GFF414at 83.446 kb on - strand, within GFF414at 83.592 kb on + strand, within GFF414at 83.592 kb on + strand, within GFF414at 83.724 kb on + strand, within GFF414at 83.724 kb on + strand, within GFF414at 83.724 kb on + strand, within GFF414at 84.369 kb on + strand, within GFF414at 84.370 kb on - strand, within GFF414at 84.586 kb on - strand, within GFF414at 84.608 kb on + strand, within GFF414at 84.608 kb on + strand, within GFF414at 84.618 kb on + strand, within GFF414at 84.619 kb on - strand, within GFF414at 84.675 kb on + strand, within GFF414at 84.675 kb on + strand, within GFF414at 84.676 kb on - strand, within GFF414at 84.676 kb on - strand, within GFF414at 84.810 kb on + strand, within GFF414at 84.811 kb on - strand, within GFF414at 84.811 kb on - strand, within GFF414at 84.858 kb on + strand, within GFF414at 84.859 kb on - strand, within GFF414at 84.859 kb on - strand, within GFF414at 84.859 kb on - strand, within GFF414at 85.012 kb on + strandat 85.086 kb on + strandat 85.191 kb on + strandat 85.192 kb on - strandat 85.192 kb on - strandat 85.192 kb on - strandat 85.227 kb on + strandat 85.227 kb on + strandat 85.227 kb on + strandat 85.228 kb on - strandat 85.228 kb on - strandat 85.653 kb on + strand, within GFF415at 86.065 kb on - strand, within GFF415at 86.065 kb on - strand, within GFF415at 86.065 kb on - strand, within GFF415at 86.065 kb on - strand, within GFF415

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1
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81,814 + GFF412 0.74 -0.1
81,814 + GFF412 0.74 +0.7
81,815 - GFF412 0.74 +1.7
81,815 - GFF412 0.74 -1.1
81,815 - GFF412 0.74 +0.1
81,815 - GFF412 0.74 -2.3
82,063 + GFF412 0.87 -0.3
82,063 + GFF412 0.87 +0.3
82,064 - GFF412 0.88 -0.2
82,097 - GFF412 0.89 -1.1
82,162 + +0.4
82,163 - +0.5
82,163 - +0.5
82,192 + +0.1
82,192 + +0.4
82,192 + +0.2
82,285 + +0.4
82,469 + GFF413 0.34 +0.9
82,469 + GFF413 0.34 +0.0
82,617 - GFF413 0.67 -0.5
82,658 + GFF413 0.77 +0.6
83,023 - +0.5
83,023 - -0.3
83,023 - -1.2
83,106 + GFF414 0.13 -0.2
83,106 + GFF414 0.13 -1.1
83,157 - GFF414 0.15 -0.9
83,251 - GFF414 0.19 +0.7
83,445 + GFF414 0.27 +0.6
83,445 + GFF414 0.27 +0.2
83,446 - GFF414 0.27 -1.3
83,592 + GFF414 0.33 -0.0
83,592 + GFF414 0.33 -1.1
83,724 + GFF414 0.39 -1.4
83,724 + GFF414 0.39 -0.4
83,724 + GFF414 0.39 -0.8
84,369 + GFF414 0.66 -0.1
84,370 - GFF414 0.66 +0.1
84,586 - GFF414 0.75 -1.3
84,608 + GFF414 0.76 -0.2
84,608 + GFF414 0.76 -0.8
84,618 + GFF414 0.76 -1.7
84,619 - GFF414 0.76 +0.5
84,675 + GFF414 0.78 -0.1
84,675 + GFF414 0.78 -0.2
84,676 - GFF414 0.78 -0.1
84,676 - GFF414 0.78 -0.2
84,810 + GFF414 0.84 +0.2
84,811 - GFF414 0.84 -0.1
84,811 - GFF414 0.84 -0.2
84,858 + GFF414 0.86 -0.5
84,859 - GFF414 0.86 -0.1
84,859 - GFF414 0.86 -1.1
84,859 - GFF414 0.86 +0.0
85,012 + +0.6
85,086 + -0.5
85,191 + +0.2
85,192 - +0.2
85,192 - +0.8
85,192 - -1.3
85,227 + -0.7
85,227 + -0.5
85,227 + -0.5
85,228 - -0.4
85,228 - -0.5
85,653 + GFF415 0.37 -0.0
86,065 - GFF415 0.71 -0.6
86,065 - GFF415 0.71 -0.3
86,065 - GFF415 0.71 +1.5
86,065 - GFF415 0.71 +0.2

Or see this region's nucleotide sequence