Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3902 and GFF3903 are separated by 8 nucleotides GFF3903 and GFF3904 are separated by 159 nucleotides GFF3904 and GFF3905 are separated by 22 nucleotides
GFF3902 - Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-), at 813,145 to 815,148
GFF3902
GFF3903 - RND efflux system, outer membrane lipoprotein CmeC, at 815,157 to 816,566
GFF3903
GFF3904 - FIG019175: putative membrane protein, at 816,726 to 817,364
GFF3904
GFF3905 - FIG019993: putative exported protein, at 817,387 to 817,899
GFF3905
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1 at 814.471 kb on + strand, within GFF3902 at 814.471 kb on + strand, within GFF3902 at 814.472 kb on - strand, within GFF3902 at 814.472 kb on - strand, within GFF3902 at 815.090 kb on - strand at 815.562 kb on + strand, within GFF3903 at 815.562 kb on + strand, within GFF3903 at 815.562 kb on + strand, within GFF3903 at 815.562 kb on + strand, within GFF3903 at 815.563 kb on - strand, within GFF3903 at 815.634 kb on + strand, within GFF3903 at 815.635 kb on - strand, within GFF3903 at 815.635 kb on - strand, within GFF3903 at 815.685 kb on + strand, within GFF3903 at 815.685 kb on + strand, within GFF3903 at 815.686 kb on - strand, within GFF3903 at 815.686 kb on - strand, within GFF3903 at 815.926 kb on - strand, within GFF3903 at 816.261 kb on + strand, within GFF3903 at 816.516 kb on + strand at 816.516 kb on + strand at 816.516 kb on + strand at 816.517 kb on - strand at 816.517 kb on - strand at 816.517 kb on - strand at 816.720 kb on - strand at 816.768 kb on + strand at 816.768 kb on + strand at 816.769 kb on - strand at 817.062 kb on + strand, within GFF3904 at 817.062 kb on + strand, within GFF3904 at 817.062 kb on + strand, within GFF3904 at 817.131 kb on + strand, within GFF3904 at 817.131 kb on + strand, within GFF3904 at 817.161 kb on + strand, within GFF3904 at 817.495 kb on + strand, within GFF3905 at 817.495 kb on + strand, within GFF3905 at 817.496 kb on - strand, within GFF3905 at 817.496 kb on - strand, within GFF3905
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 814,471 + GFF3902 0.66 -0.2 814,471 + GFF3902 0.66 -0.4 814,472 - GFF3902 0.66 -1.2 814,472 - GFF3902 0.66 +0.9 815,090 - +0.3 815,562 + GFF3903 0.29 -0.2 815,562 + GFF3903 0.29 -2.3 815,562 + GFF3903 0.29 -0.2 815,562 + GFF3903 0.29 -0.1 815,563 - GFF3903 0.29 -1.2 815,634 + GFF3903 0.34 -0.5 815,635 - GFF3903 0.34 -1.8 815,635 - GFF3903 0.34 +0.2 815,685 + GFF3903 0.37 +0.5 815,685 + GFF3903 0.37 +0.4 815,686 - GFF3903 0.38 -0.2 815,686 - GFF3903 0.38 -0.0 815,926 - GFF3903 0.55 +0.4 816,261 + GFF3903 0.78 -0.6 816,516 + -1.9 816,516 + -0.2 816,516 + -0.0 816,517 - +0.0 816,517 - +1.1 816,517 - -0.7 816,720 - +0.4 816,768 + -0.3 816,768 + -0.4 816,769 - -0.3 817,062 + GFF3904 0.53 +0.1 817,062 + GFF3904 0.53 +1.0 817,062 + GFF3904 0.53 -0.0 817,131 + GFF3904 0.63 -0.7 817,131 + GFF3904 0.63 -0.0 817,161 + GFF3904 0.68 -0.2 817,495 + GFF3905 0.21 +1.5 817,495 + GFF3905 0.21 -0.1 817,496 - GFF3905 0.21 -1.0 817,496 - GFF3905 0.21 -0.6
Or see this region's nucleotide sequence