Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3840 and GFF3841 are separated by 55 nucleotides GFF3841 and GFF3842 are separated by 46 nucleotides GFF3842 and GFF3843 are separated by 46 nucleotides
GFF3840 - RND efflux system, inner membrane transporter CmeB, at 748,173 to 751,337
GFF3840
GFF3841 - RND efflux system, outer membrane lipoprotein CmeC, at 751,393 to 752,883
GFF3841
GFF3842 - FIG01199081: hypothetical protein, at 752,930 to 753,799
GFF3842
GFF3843 - membrane protein, at 753,846 to 754,724
GFF3843
Position (kb) 751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 750.432 kb on + strand, within GFF3840 at 750.432 kb on + strand, within GFF3840 at 750.432 kb on + strand, within GFF3840 at 750.432 kb on + strand, within GFF3840 at 750.433 kb on - strand, within GFF3840 at 750.433 kb on - strand, within GFF3840 at 750.433 kb on - strand, within GFF3840 at 750.615 kb on + strand, within GFF3840 at 750.615 kb on + strand, within GFF3840 at 750.790 kb on - strand, within GFF3840 at 750.834 kb on + strand, within GFF3840 at 750.834 kb on + strand, within GFF3840 at 750.834 kb on + strand, within GFF3840 at 750.835 kb on - strand, within GFF3840 at 750.921 kb on + strand, within GFF3840 at 750.921 kb on + strand, within GFF3840 at 750.936 kb on + strand, within GFF3840 at 750.936 kb on + strand, within GFF3840 at 750.936 kb on + strand, within GFF3840 at 750.936 kb on + strand, within GFF3840 at 750.937 kb on - strand, within GFF3840 at 750.937 kb on - strand, within GFF3840 at 751.341 kb on + strand at 751.341 kb on + strand at 751.342 kb on - strand at 751.342 kb on - strand at 751.342 kb on - strand at 751.513 kb on + strand at 751.513 kb on + strand at 751.513 kb on + strand at 751.513 kb on + strand at 751.514 kb on - strand at 751.514 kb on - strand at 751.514 kb on - strand at 751.714 kb on + strand, within GFF3841 at 751.715 kb on - strand, within GFF3841 at 751.808 kb on - strand, within GFF3841 at 751.808 kb on - strand, within GFF3841 at 751.808 kb on - strand, within GFF3841 at 751.891 kb on + strand, within GFF3841 at 751.891 kb on + strand, within GFF3841 at 751.892 kb on - strand, within GFF3841 at 751.892 kb on - strand, within GFF3841 at 752.790 kb on + strand at 752.849 kb on - strand at 752.849 kb on - strand at 752.849 kb on - strand at 752.849 kb on - strand at 752.946 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.991 kb on + strand at 752.992 kb on - strand at 752.992 kb on - strand at 752.992 kb on - strand at 753.069 kb on + strand, within GFF3842 at 753.070 kb on - strand, within GFF3842 at 753.070 kb on - strand, within GFF3842 at 753.225 kb on + strand, within GFF3842 at 753.258 kb on + strand, within GFF3842 at 753.258 kb on + strand, within GFF3842 at 753.258 kb on + strand, within GFF3842 at 753.258 kb on + strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.259 kb on - strand, within GFF3842 at 753.411 kb on + strand, within GFF3842 at 753.450 kb on + strand, within GFF3842 at 753.450 kb on + strand, within GFF3842 at 753.450 kb on + strand, within GFF3842 at 753.451 kb on - strand, within GFF3842 at 753.451 kb on - strand, within GFF3842 at 753.451 kb on - strand, within GFF3842 at 753.451 kb on - strand, within GFF3842 at 753.453 kb on + strand, within GFF3842 at 753.453 kb on + strand, within GFF3842 at 753.453 kb on + strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842 at 753.454 kb on - strand, within GFF3842
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 750,432 + GFF3840 0.71 +0.0 750,432 + GFF3840 0.71 -0.2 750,432 + GFF3840 0.71 -0.1 750,432 + GFF3840 0.71 +0.3 750,433 - GFF3840 0.71 -0.0 750,433 - GFF3840 0.71 +0.8 750,433 - GFF3840 0.71 -0.9 750,615 + GFF3840 0.77 -0.7 750,615 + GFF3840 0.77 +1.0 750,790 - GFF3840 0.83 +0.6 750,834 + GFF3840 0.84 +1.1 750,834 + GFF3840 0.84 -0.0 750,834 + GFF3840 0.84 +1.0 750,835 - GFF3840 0.84 +0.9 750,921 + GFF3840 0.87 -0.4 750,921 + GFF3840 0.87 +1.0 750,936 + GFF3840 0.87 -1.1 750,936 + GFF3840 0.87 +0.1 750,936 + GFF3840 0.87 -0.2 750,936 + GFF3840 0.87 -0.5 750,937 - GFF3840 0.87 +0.2 750,937 - GFF3840 0.87 +1.0 751,341 + +1.4 751,341 + -0.4 751,342 - -0.0 751,342 - +1.4 751,342 - +0.2 751,513 + +0.2 751,513 + -0.2 751,513 + -0.6 751,513 + -0.1 751,514 - +0.5 751,514 - -0.1 751,514 - -0.8 751,714 + GFF3841 0.22 -0.6 751,715 - GFF3841 0.22 -2.3 751,808 - GFF3841 0.28 +0.5 751,808 - GFF3841 0.28 -1.9 751,808 - GFF3841 0.28 -0.9 751,891 + GFF3841 0.33 -0.5 751,891 + GFF3841 0.33 +0.4 751,892 - GFF3841 0.33 +0.1 751,892 - GFF3841 0.33 -0.9 752,790 + +0.4 752,849 - -0.6 752,849 - +1.4 752,849 - -1.1 752,849 - -0.5 752,946 + -0.1 752,991 + -0.6 752,991 + -0.7 752,991 + -0.5 752,991 + -0.4 752,991 + -1.3 752,991 + -0.2 752,991 + -1.0 752,991 + -0.7 752,992 - -1.2 752,992 - +0.3 752,992 - +0.3 753,069 + GFF3842 0.16 -0.4 753,070 - GFF3842 0.16 -0.1 753,070 - GFF3842 0.16 -0.2 753,225 + GFF3842 0.34 -1.2 753,258 + GFF3842 0.38 -1.1 753,258 + GFF3842 0.38 -1.0 753,258 + GFF3842 0.38 -0.3 753,258 + GFF3842 0.38 -2.9 753,259 - GFF3842 0.38 +2.3 753,259 - GFF3842 0.38 -0.4 753,259 - GFF3842 0.38 -1.2 753,259 - GFF3842 0.38 -0.1 753,259 - GFF3842 0.38 -0.9 753,411 + GFF3842 0.55 +0.1 753,450 + GFF3842 0.60 -1.0 753,450 + GFF3842 0.60 -2.0 753,450 + GFF3842 0.60 -1.3 753,451 - GFF3842 0.60 -0.7 753,451 - GFF3842 0.60 -0.3 753,451 - GFF3842 0.60 +0.0 753,451 - GFF3842 0.60 -0.5 753,453 + GFF3842 0.60 -0.6 753,453 + GFF3842 0.60 -1.0 753,453 + GFF3842 0.60 -0.5 753,454 - GFF3842 0.60 -1.5 753,454 - GFF3842 0.60 -2.1 753,454 - GFF3842 0.60 -0.5 753,454 - GFF3842 0.60 -0.1 753,454 - GFF3842 0.60 -1.7 753,454 - GFF3842 0.60 -1.1
Or see this region's nucleotide sequence