Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3808 and GFF3809 are separated by 10 nucleotides GFF3809 and GFF3810 are separated by 82 nucleotides GFF3810 and GFF3811 are separated by 55 nucleotides
GFF3808 - Glycosyltransferase, at 706,414 to 711,405
GFF3808
GFF3809 - Glycosyltransferase (EC 2.4.1.-), at 711,416 to 713,254
GFF3809
GFF3810 - hypothetical protein, at 713,337 to 714,188
GFF3810
GFF3811 - COG0457: FOG: TPR repeat, at 714,244 to 715,563
GFF3811
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -1
0
1
2 at 711.117 kb on - strand at 711.117 kb on - strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.544 kb on - strand at 711.544 kb on - strand at 711.544 kb on - strand at 711.636 kb on + strand, within GFF3809 at 711.636 kb on + strand, within GFF3809 at 711.822 kb on + strand, within GFF3809 at 711.822 kb on + strand, within GFF3809 at 711.822 kb on + strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 711.823 kb on - strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.101 kb on + strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.102 kb on - strand, within GFF3809 at 712.110 kb on + strand, within GFF3809 at 712.110 kb on + strand, within GFF3809 at 712.110 kb on + strand, within GFF3809 at 712.344 kb on + strand, within GFF3809 at 712.345 kb on - strand, within GFF3809 at 712.542 kb on + strand, within GFF3809 at 712.542 kb on + strand, within GFF3809 at 712.542 kb on + strand, within GFF3809 at 712.542 kb on + strand, within GFF3809 at 712.543 kb on - strand, within GFF3809 at 712.543 kb on - strand, within GFF3809 at 712.543 kb on - strand, within GFF3809 at 712.543 kb on - strand, within GFF3809 at 712.764 kb on + strand, within GFF3809 at 712.764 kb on + strand, within GFF3809 at 712.764 kb on + strand, within GFF3809 at 712.765 kb on - strand, within GFF3809 at 712.765 kb on - strand, within GFF3809 at 712.813 kb on - strand, within GFF3809 at 712.813 kb on - strand, within GFF3809 at 712.857 kb on + strand, within GFF3809 at 712.857 kb on + strand, within GFF3809 at 712.857 kb on + strand, within GFF3809 at 712.858 kb on - strand, within GFF3809 at 712.858 kb on - strand, within GFF3809 at 712.858 kb on - strand, within GFF3809 at 712.920 kb on + strand, within GFF3809 at 712.921 kb on - strand, within GFF3809 at 713.230 kb on - strand at 713.230 kb on - strand at 713.367 kb on + strand at 713.368 kb on - strand at 713.531 kb on + strand, within GFF3810 at 713.573 kb on + strand, within GFF3810 at 713.573 kb on + strand, within GFF3810 at 713.574 kb on - strand, within GFF3810 at 713.574 kb on - strand, within GFF3810 at 713.574 kb on - strand, within GFF3810 at 713.574 kb on - strand, within GFF3810 at 713.574 kb on - strand, within GFF3810 at 713.574 kb on - strand, within GFF3810 at 713.609 kb on + strand, within GFF3810
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 711,117 - -0.7 711,117 - +0.3 711,543 + +0.2 711,543 + +1.0 711,543 + +1.1 711,543 + +0.6 711,543 + +0.9 711,543 + -0.6 711,543 + +0.9 711,544 - +2.1 711,544 - +0.8 711,544 - +0.5 711,636 + GFF3809 0.12 +0.4 711,636 + GFF3809 0.12 +0.1 711,822 + GFF3809 0.22 +0.3 711,822 + GFF3809 0.22 +2.2 711,822 + GFF3809 0.22 -0.1 711,823 - GFF3809 0.22 +0.9 711,823 - GFF3809 0.22 -0.0 711,823 - GFF3809 0.22 +0.8 711,823 - GFF3809 0.22 +0.2 711,823 - GFF3809 0.22 +0.1 711,823 - GFF3809 0.22 +0.2 712,101 + GFF3809 0.37 +0.1 712,101 + GFF3809 0.37 +1.0 712,101 + GFF3809 0.37 -0.2 712,101 + GFF3809 0.37 +0.7 712,101 + GFF3809 0.37 -0.9 712,102 - GFF3809 0.37 +0.3 712,102 - GFF3809 0.37 -0.2 712,102 - GFF3809 0.37 -0.4 712,102 - GFF3809 0.37 -0.3 712,102 - GFF3809 0.37 +0.2 712,110 + GFF3809 0.38 -0.6 712,110 + GFF3809 0.38 +0.3 712,110 + GFF3809 0.38 +0.9 712,344 + GFF3809 0.50 +1.3 712,345 - GFF3809 0.51 -0.5 712,542 + GFF3809 0.61 -0.5 712,542 + GFF3809 0.61 +0.6 712,542 + GFF3809 0.61 -0.4 712,542 + GFF3809 0.61 -0.5 712,543 - GFF3809 0.61 +0.2 712,543 - GFF3809 0.61 -0.9 712,543 - GFF3809 0.61 +0.2 712,543 - GFF3809 0.61 -0.0 712,764 + GFF3809 0.73 +0.5 712,764 + GFF3809 0.73 -0.7 712,764 + GFF3809 0.73 +0.6 712,765 - GFF3809 0.73 +0.7 712,765 - GFF3809 0.73 +1.0 712,813 - GFF3809 0.76 -0.7 712,813 - GFF3809 0.76 +1.7 712,857 + GFF3809 0.78 -0.8 712,857 + GFF3809 0.78 +0.6 712,857 + GFF3809 0.78 -0.3 712,858 - GFF3809 0.78 +0.1 712,858 - GFF3809 0.78 +0.7 712,858 - GFF3809 0.78 +0.2 712,920 + GFF3809 0.82 +0.8 712,921 - GFF3809 0.82 -0.2 713,230 - +1.0 713,230 - +0.7 713,367 + -0.0 713,368 - +0.1 713,531 + GFF3810 0.23 -0.4 713,573 + GFF3810 0.28 +0.5 713,573 + GFF3810 0.28 -0.4 713,574 - GFF3810 0.28 +2.0 713,574 - GFF3810 0.28 -1.0 713,574 - GFF3810 0.28 +0.5 713,574 - GFF3810 0.28 -1.0 713,574 - GFF3810 0.28 +0.7 713,574 - GFF3810 0.28 +0.5 713,609 + GFF3810 0.32 +0.1
Or see this region's nucleotide sequence