Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3796 and GFF3797 are separated by 129 nucleotides GFF3797 and GFF3798 are separated by 34 nucleotides
GFF3796 - Transcriptional regulator ligR, LysR family, at 696,369 to 697,265
GFF3796
GFF3797 - Hypothetical ABC transport system, periplasmic component, at 697,395 to 698,096
GFF3797
GFF3798 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 698,131 to 699,165
GFF3798
Position (kb) 697
698
699 Strain fitness (log2 ratio) -2
-1
0
1 at 696.497 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 697.243 kb on + strand at 697.243 kb on + strand at 697.243 kb on + strand at 697.244 kb on - strand at 697.244 kb on - strand at 697.294 kb on + strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.298 kb on + strand at 697.298 kb on + strand at 697.750 kb on - strand, within GFF3797 at 698.161 kb on + strand at 698.161 kb on + strand at 698.162 kb on - strand at 698.539 kb on + strand, within GFF3798 at 698.556 kb on + strand, within GFF3798 at 698.557 kb on - strand, within GFF3798 at 698.621 kb on - strand, within GFF3798 at 698.630 kb on - strand, within GFF3798 at 698.647 kb on + strand, within GFF3798 at 698.648 kb on - strand, within GFF3798 at 698.716 kb on + strand, within GFF3798 at 698.717 kb on - strand, within GFF3798 at 698.824 kb on + strand, within GFF3798 at 698.825 kb on - strand, within GFF3798 at 698.825 kb on - strand, within GFF3798 at 699.031 kb on + strand, within GFF3798 at 699.032 kb on - strand, within GFF3798 at 699.034 kb on + strand, within GFF3798 at 699.035 kb on - strand, within GFF3798 at 699.035 kb on - strand, within GFF3798 at 699.052 kb on + strand, within GFF3798 at 699.053 kb on - strand, within GFF3798 at 699.053 kb on - strand, within GFF3798 at 699.055 kb on - strand, within GFF3798
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 696,497 - GFF3796 0.14 +0.1 696,827 - GFF3796 0.51 -0.2 696,827 - GFF3796 0.51 +0.0 696,827 - GFF3796 0.51 -0.1 696,827 - GFF3796 0.51 -0.0 696,827 - GFF3796 0.51 -0.8 697,243 + +0.4 697,243 + -1.4 697,243 + -0.6 697,244 - -0.3 697,244 - +0.1 697,294 + -2.2 697,295 - -0.7 697,295 - +0.3 697,295 - +0.2 697,295 - +0.0 697,295 - -0.9 697,298 + +1.0 697,298 + +0.5 697,750 - GFF3797 0.51 -0.4 698,161 + +0.2 698,161 + -0.1 698,162 - +0.2 698,539 + GFF3798 0.39 +0.3 698,556 + GFF3798 0.41 +0.6 698,557 - GFF3798 0.41 -0.5 698,621 - GFF3798 0.47 -0.2 698,630 - GFF3798 0.48 -0.6 698,647 + GFF3798 0.50 +0.1 698,648 - GFF3798 0.50 +0.1 698,716 + GFF3798 0.57 +0.0 698,717 - GFF3798 0.57 -0.5 698,824 + GFF3798 0.67 +1.0 698,825 - GFF3798 0.67 -0.4 698,825 - GFF3798 0.67 -0.3 699,031 + GFF3798 0.87 -0.1 699,032 - GFF3798 0.87 +0.4 699,034 + GFF3798 0.87 -0.1 699,035 - GFF3798 0.87 -0.3 699,035 - GFF3798 0.87 -0.4 699,052 + GFF3798 0.89 +0.1 699,053 - GFF3798 0.89 -0.4 699,053 - GFF3798 0.89 -0.7 699,055 - GFF3798 0.89 +0.4
Or see this region's nucleotide sequence