Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3710 and GFF3711 are separated by 2 nucleotides GFF3711 and GFF3712 overlap by 8 nucleotides GFF3712 and GFF3713 are separated by 3 nucleotides
GFF3710 - Tricarboxylate transport protein TctC, at 602,323 to 603,381
GFF3710
GFF3711 - Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4), at 603,384 to 605,681
GFF3711
GFF3712 - Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4), at 605,674 to 606,540
GFF3712
GFF3713 - Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4), at 606,544 to 607,020
GFF3713
Position (kb) 603
604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 602.515 kb on + strand, within GFF3710 at 602.638 kb on + strand, within GFF3710 at 602.638 kb on + strand, within GFF3710 at 602.638 kb on + strand, within GFF3710 at 602.638 kb on + strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.639 kb on - strand, within GFF3710 at 602.666 kb on - strand, within GFF3710 at 602.666 kb on - strand, within GFF3710 at 602.737 kb on + strand, within GFF3710 at 602.738 kb on - strand, within GFF3710 at 602.738 kb on - strand, within GFF3710 at 602.738 kb on - strand, within GFF3710 at 602.872 kb on + strand, within GFF3710 at 602.872 kb on + strand, within GFF3710 at 602.872 kb on + strand, within GFF3710 at 602.872 kb on + strand, within GFF3710 at 602.873 kb on - strand, within GFF3710 at 603.017 kb on - strand, within GFF3710 at 603.136 kb on + strand, within GFF3710 at 603.137 kb on - strand, within GFF3710 at 603.137 kb on - strand, within GFF3710 at 603.331 kb on + strand at 603.468 kb on + strand at 603.915 kb on + strand, within GFF3711 at 603.915 kb on + strand, within GFF3711 at 603.915 kb on + strand, within GFF3711 at 603.916 kb on - strand, within GFF3711 at 603.916 kb on - strand, within GFF3711 at 603.916 kb on - strand, within GFF3711 at 603.933 kb on + strand, within GFF3711 at 604.413 kb on + strand, within GFF3711 at 604.414 kb on - strand, within GFF3711 at 605.298 kb on + strand, within GFF3711 at 605.298 kb on + strand, within GFF3711 at 605.298 kb on + strand, within GFF3711 at 605.298 kb on + strand, within GFF3711 at 605.298 kb on + strand, within GFF3711 at 605.299 kb on - strand, within GFF3711 at 605.299 kb on - strand, within GFF3711 at 605.299 kb on - strand, within GFF3711 at 605.586 kb on + strand at 605.586 kb on + strand at 605.587 kb on - strand at 606.136 kb on + strand, within GFF3712 at 606.136 kb on + strand, within GFF3712 at 606.137 kb on - strand, within GFF3712 at 606.137 kb on - strand, within GFF3712 at 606.139 kb on + strand, within GFF3712 at 606.140 kb on - strand, within GFF3712
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 602,515 + GFF3710 0.18 +0.6 602,638 + GFF3710 0.30 -0.9 602,638 + GFF3710 0.30 -2.6 602,638 + GFF3710 0.30 +0.1 602,638 + GFF3710 0.30 -0.3 602,639 - GFF3710 0.30 +0.6 602,639 - GFF3710 0.30 +0.3 602,639 - GFF3710 0.30 +0.1 602,639 - GFF3710 0.30 +0.6 602,639 - GFF3710 0.30 +0.5 602,666 - GFF3710 0.32 -0.0 602,666 - GFF3710 0.32 -0.6 602,737 + GFF3710 0.39 +0.3 602,738 - GFF3710 0.39 +0.1 602,738 - GFF3710 0.39 -0.3 602,738 - GFF3710 0.39 -0.3 602,872 + GFF3710 0.52 -0.0 602,872 + GFF3710 0.52 -0.2 602,872 + GFF3710 0.52 -0.1 602,872 + GFF3710 0.52 +0.2 602,873 - GFF3710 0.52 -0.4 603,017 - GFF3710 0.66 -0.4 603,136 + GFF3710 0.77 +0.8 603,137 - GFF3710 0.77 +0.2 603,137 - GFF3710 0.77 +0.1 603,331 + +1.8 603,468 + -0.9 603,915 + GFF3711 0.23 +0.6 603,915 + GFF3711 0.23 -0.1 603,915 + GFF3711 0.23 +0.1 603,916 - GFF3711 0.23 -0.5 603,916 - GFF3711 0.23 -0.4 603,916 - GFF3711 0.23 -1.0 603,933 + GFF3711 0.24 -0.3 604,413 + GFF3711 0.45 +0.1 604,414 - GFF3711 0.45 +0.4 605,298 + GFF3711 0.83 +1.0 605,298 + GFF3711 0.83 +0.0 605,298 + GFF3711 0.83 +0.8 605,298 + GFF3711 0.83 -0.0 605,298 + GFF3711 0.83 +0.2 605,299 - GFF3711 0.83 +1.2 605,299 - GFF3711 0.83 -2.2 605,299 - GFF3711 0.83 +1.2 605,586 + -0.9 605,586 + +0.4 605,587 - +0.0 606,136 + GFF3712 0.53 -1.1 606,136 + GFF3712 0.53 +0.8 606,137 - GFF3712 0.53 +0.4 606,137 - GFF3712 0.53 -0.4 606,139 + GFF3712 0.54 -0.6 606,140 - GFF3712 0.54 +0.9
Or see this region's nucleotide sequence