Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3652 and GFF3653 are separated by 19 nucleotides GFF3653 and GFF3654 overlap by 4 nucleotides GFF3654 and GFF3655 are separated by 72 nucleotides
GFF3652 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 539,038 to 539,514
GFF3652
GFF3653 - Molybdopterin biosynthesis molybdochelatase MogA, at 539,534 to 540,142
GFF3653
GFF3654 - FIG138315: Putative alpha helix protein, at 540,139 to 540,786
GFF3654
GFF3655 - TldE protein, part of TldE/TldD proteolytic complex, at 540,859 to 542,274
GFF3655
Position (kb) 540
541 Strain fitness (log2 ratio) -2
-1
0
1
2 at 539.420 kb on + strand, within GFF3652 at 539.420 kb on + strand, within GFF3652 at 539.602 kb on - strand, within GFF3653 at 539.602 kb on - strand, within GFF3653 at 539.602 kb on - strand, within GFF3653 at 539.628 kb on + strand, within GFF3653 at 539.629 kb on - strand, within GFF3653 at 540.057 kb on + strand, within GFF3653 at 540.057 kb on + strand, within GFF3653 at 540.057 kb on + strand, within GFF3653 at 540.057 kb on + strand, within GFF3653 at 540.058 kb on - strand, within GFF3653 at 540.225 kb on - strand, within GFF3654 at 540.754 kb on + strand at 540.754 kb on + strand at 540.755 kb on - strand at 540.755 kb on - strand at 540.755 kb on - strand at 540.755 kb on - strand at 540.761 kb on + strand at 540.762 kb on - strand at 540.762 kb on - strand at 540.800 kb on + strand at 540.800 kb on + strand at 540.800 kb on + strand at 540.801 kb on - strand at 540.801 kb on - strand at 540.801 kb on - strand at 540.801 kb on - strand at 540.801 kb on - strand at 540.843 kb on + strand at 540.843 kb on + strand at 540.843 kb on + strand at 540.843 kb on + strand at 540.843 kb on + strand at 540.844 kb on - strand at 540.844 kb on - strand at 540.844 kb on - strand at 540.849 kb on - strand at 540.919 kb on + strand at 541.097 kb on - strand, within GFF3655 at 541.097 kb on - strand, within GFF3655 at 541.246 kb on + strand, within GFF3655 at 541.528 kb on + strand, within GFF3655 at 541.529 kb on - strand, within GFF3655 at 541.529 kb on - strand, within GFF3655 at 541.529 kb on - strand, within GFF3655 at 541.582 kb on + strand, within GFF3655 at 541.687 kb on + strand, within GFF3655 at 541.687 kb on + strand, within GFF3655
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 539,420 + GFF3652 0.80 +0.2 539,420 + GFF3652 0.80 -0.1 539,602 - GFF3653 0.11 -1.8 539,602 - GFF3653 0.11 -1.0 539,602 - GFF3653 0.11 -0.8 539,628 + GFF3653 0.15 -0.9 539,629 - GFF3653 0.16 -0.4 540,057 + GFF3653 0.86 +1.3 540,057 + GFF3653 0.86 -1.4 540,057 + GFF3653 0.86 -0.1 540,057 + GFF3653 0.86 -0.8 540,058 - GFF3653 0.86 -1.2 540,225 - GFF3654 0.13 +0.8 540,754 + +0.2 540,754 + +0.3 540,755 - -0.9 540,755 - +0.8 540,755 - +0.7 540,755 - +0.1 540,761 + -0.3 540,762 - -0.6 540,762 - -1.1 540,800 + +1.9 540,800 + +1.3 540,800 + -0.8 540,801 - -0.8 540,801 - -0.6 540,801 - +0.4 540,801 - -0.1 540,801 - -0.6 540,843 + -0.3 540,843 + -0.5 540,843 + +1.5 540,843 + -0.2 540,843 + -0.2 540,844 - +0.2 540,844 - -0.2 540,844 - -0.9 540,849 - -0.1 540,919 + +0.4 541,097 - GFF3655 0.17 +0.0 541,097 - GFF3655 0.17 -0.2 541,246 + GFF3655 0.27 -0.2 541,528 + GFF3655 0.47 -0.1 541,529 - GFF3655 0.47 -1.1 541,529 - GFF3655 0.47 -0.0 541,529 - GFF3655 0.47 -1.4 541,582 + GFF3655 0.51 -1.2 541,687 + GFF3655 0.58 +1.3 541,687 + GFF3655 0.58 -1.1
Or see this region's nucleotide sequence