Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3607 and GFF3608 are separated by 480 nucleotides GFF3608 and GFF3609 are separated by 103 nucleotides
GFF3607 - hypothetical protein, at 494,347 to 494,466
GFF3607
GFF3608 - hypothetical protein, at 494,947 to 496,116
GFF3608
GFF3609 - Transcriptional regulator, LysR family, at 496,220 to 497,152
GFF3609
Position (kb) 494
495
496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 493.949 kb on - strand at 493.949 kb on - strand at 493.988 kb on + strand at 493.988 kb on + strand at 493.989 kb on - strand at 493.989 kb on - strand at 493.989 kb on - strand at 493.989 kb on - strand at 493.995 kb on + strand at 493.995 kb on + strand at 494.005 kb on + strand at 494.005 kb on + strand at 494.005 kb on + strand at 494.005 kb on + strand at 494.006 kb on - strand at 494.006 kb on - strand at 494.006 kb on - strand at 494.006 kb on - strand at 494.006 kb on - strand at 494.006 kb on - strand at 494.006 kb on - strand at 494.006 kb on - strand at 494.009 kb on + strand at 494.009 kb on + strand at 494.009 kb on + strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.028 kb on + strand at 494.028 kb on + strand at 494.029 kb on - strand at 494.029 kb on - strand at 494.029 kb on - strand at 494.029 kb on - strand at 494.071 kb on + strand at 494.122 kb on - strand at 494.265 kb on + strand at 494.288 kb on + strand at 494.314 kb on - strand at 494.314 kb on - strand at 494.314 kb on - strand at 494.320 kb on + strand at 494.321 kb on - strand at 494.321 kb on - strand at 494.321 kb on - strand at 494.348 kb on + strand at 494.486 kb on + strand at 494.498 kb on + strand at 494.498 kb on + strand at 494.498 kb on + strand at 494.499 kb on - strand at 494.760 kb on + strand at 494.761 kb on - strand at 494.808 kb on + strand at 494.809 kb on - strand at 494.809 kb on - strand at 494.949 kb on - strand at 494.949 kb on - strand at 495.112 kb on - strand, within GFF3608 at 495.545 kb on + strand, within GFF3608 at 495.545 kb on + strand, within GFF3608 at 495.545 kb on + strand, within GFF3608 at 495.546 kb on - strand, within GFF3608 at 495.546 kb on - strand, within GFF3608 at 495.546 kb on - strand, within GFF3608 at 495.546 kb on - strand, within GFF3608 at 495.554 kb on + strand, within GFF3608 at 495.554 kb on + strand, within GFF3608 at 495.554 kb on + strand, within GFF3608 at 495.554 kb on + strand, within GFF3608 at 495.554 kb on - strand, within GFF3608 at 495.555 kb on - strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.897 kb on - strand, within GFF3608 at 495.897 kb on - strand, within GFF3608 at 495.897 kb on - strand, within GFF3608 at 495.981 kb on + strand, within GFF3608 at 496.108 kb on + strand at 496.109 kb on - strand at 496.109 kb on - strand at 496.109 kb on - strand at 496.109 kb on - strand at 496.129 kb on + strand at 496.129 kb on + strand at 496.130 kb on - strand at 496.130 kb on - strand at 496.156 kb on + strand at 496.156 kb on + strand at 496.156 kb on + strand at 496.157 kb on - strand at 496.221 kb on + strand at 496.222 kb on - strand at 496.519 kb on - strand, within GFF3609 at 496.519 kb on - strand, within GFF3609 at 496.519 kb on - strand, within GFF3609 at 496.519 kb on - strand, within GFF3609 at 496.533 kb on + strand, within GFF3609
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 493,949 - -1.1 493,949 - -0.1 493,988 + -1.4 493,988 + -0.6 493,989 - +0.1 493,989 - +0.3 493,989 - +0.1 493,989 - -0.1 493,995 + +0.4 493,995 + -1.6 494,005 + -0.8 494,005 + -0.2 494,005 + +0.6 494,005 + -0.1 494,006 - +0.2 494,006 - -0.1 494,006 - -0.0 494,006 - -0.7 494,006 - +0.2 494,006 - -3.0 494,006 - -0.6 494,006 - +0.3 494,009 + -0.1 494,009 + +1.1 494,009 + -1.0 494,010 - -0.3 494,010 - +0.5 494,010 - -0.3 494,028 + -0.3 494,028 + +0.4 494,029 - +0.8 494,029 - +0.1 494,029 - -0.1 494,029 - +0.1 494,071 + +0.1 494,122 - -1.0 494,265 + +0.4 494,288 + +1.1 494,314 - +0.6 494,314 - +0.4 494,314 - -0.0 494,320 + -0.8 494,321 - +0.9 494,321 - +0.2 494,321 - -1.9 494,348 + -0.7 494,486 + -0.3 494,498 + +0.0 494,498 + -0.1 494,498 + -0.4 494,499 - -0.5 494,760 + +0.1 494,761 - +0.2 494,808 + -0.1 494,809 - +0.3 494,809 - +0.4 494,949 - +0.5 494,949 - -0.1 495,112 - GFF3608 0.14 +1.0 495,545 + GFF3608 0.51 -0.9 495,545 + GFF3608 0.51 -0.2 495,545 + GFF3608 0.51 -0.5 495,546 - GFF3608 0.51 +0.2 495,546 - GFF3608 0.51 -1.3 495,546 - GFF3608 0.51 +0.1 495,546 - GFF3608 0.51 -1.3 495,554 + GFF3608 0.52 -0.1 495,554 + GFF3608 0.52 -0.1 495,554 + GFF3608 0.52 -1.4 495,554 + GFF3608 0.52 -0.2 495,554 - GFF3608 0.52 +0.6 495,555 - GFF3608 0.52 +1.1 495,896 + GFF3608 0.81 +0.5 495,896 + GFF3608 0.81 -0.5 495,896 + GFF3608 0.81 +0.8 495,896 + GFF3608 0.81 -0.0 495,896 + GFF3608 0.81 -0.6 495,897 - GFF3608 0.81 +0.6 495,897 - GFF3608 0.81 -1.0 495,897 - GFF3608 0.81 -2.1 495,981 + GFF3608 0.88 -0.5 496,108 + -1.2 496,109 - -0.0 496,109 - -0.4 496,109 - -0.3 496,109 - -1.6 496,129 + -1.0 496,129 + +0.3 496,130 - +0.3 496,130 - +0.1 496,156 + -0.8 496,156 + -1.1 496,156 + -1.3 496,157 - +0.3 496,221 + -0.1 496,222 - -0.5 496,519 - GFF3609 0.32 -0.1 496,519 - GFF3609 0.32 -0.1 496,519 - GFF3609 0.32 -1.0 496,519 - GFF3609 0.32 +0.4 496,533 + GFF3609 0.34 +0.2
Or see this region's nucleotide sequence