Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3533 and GFF3534 are separated by 10 nucleotides GFF3534 and GFF3535 are separated by 166 nucleotides
GFF3533 - Thymidine phosphorylase (EC 2.4.2.4), at 422,090 to 424,201
GFF3533
GFF3534 - TRAP transporter solute receptor, TAXI family, at 424,212 to 425,540
GFF3534
GFF3535 - Tricarboxylate transport protein TctC, at 425,707 to 426,672
GFF3535
Position (kb) 424
425
426 Strain fitness (log2 ratio) -2
-1
0
1 at 423.501 kb on - strand, within GFF3533 at 423.689 kb on + strand, within GFF3533 at 423.689 kb on + strand, within GFF3533 at 423.689 kb on + strand, within GFF3533 at 424.267 kb on + strand at 424.268 kb on - strand at 424.268 kb on - strand at 424.268 kb on - strand at 424.282 kb on + strand at 424.283 kb on - strand at 424.403 kb on - strand, within GFF3534 at 424.438 kb on + strand, within GFF3534 at 424.439 kb on - strand, within GFF3534 at 424.439 kb on - strand, within GFF3534 at 424.439 kb on - strand, within GFF3534 at 424.541 kb on - strand, within GFF3534 at 424.823 kb on - strand, within GFF3534 at 424.841 kb on - strand, within GFF3534 at 425.354 kb on - strand, within GFF3534 at 425.374 kb on + strand, within GFF3534 at 425.374 kb on + strand, within GFF3534 at 425.375 kb on - strand, within GFF3534 at 425.375 kb on - strand, within GFF3534 at 425.440 kb on + strand at 425.440 kb on + strand at 425.440 kb on + strand at 425.440 kb on + strand at 425.440 kb on - strand at 425.441 kb on - strand at 425.521 kb on + strand at 425.521 kb on + strand at 425.521 kb on + strand at 425.522 kb on - strand at 425.522 kb on - strand at 425.522 kb on - strand at 425.522 kb on - strand at 425.551 kb on + strand at 425.552 kb on - strand at 425.552 kb on - strand at 425.660 kb on - strand at 425.810 kb on - strand, within GFF3535 at 425.962 kb on - strand, within GFF3535 at 425.962 kb on - strand, within GFF3535 at 425.962 kb on - strand, within GFF3535 at 426.103 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.161 kb on - strand, within GFF3535 at 426.161 kb on - strand, within GFF3535 at 426.161 kb on - strand, within GFF3535 at 426.247 kb on + strand, within GFF3535 at 426.388 kb on + strand, within GFF3535
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 423,501 - GFF3533 0.67 -2.2 423,689 + GFF3533 0.76 +0.7 423,689 + GFF3533 0.76 -0.5 423,689 + GFF3533 0.76 -0.8 424,267 + -0.1 424,268 - +0.1 424,268 - +0.0 424,268 - -1.0 424,282 + -0.4 424,283 - +0.0 424,403 - GFF3534 0.14 +0.4 424,438 + GFF3534 0.17 -1.3 424,439 - GFF3534 0.17 +0.5 424,439 - GFF3534 0.17 -0.0 424,439 - GFF3534 0.17 +0.6 424,541 - GFF3534 0.25 +0.6 424,823 - GFF3534 0.46 +1.4 424,841 - GFF3534 0.47 -0.2 425,354 - GFF3534 0.86 +0.6 425,374 + GFF3534 0.87 -0.6 425,374 + GFF3534 0.87 -0.0 425,375 - GFF3534 0.88 -0.9 425,375 - GFF3534 0.88 -0.3 425,440 + +0.3 425,440 + -0.0 425,440 + -0.4 425,440 + -1.0 425,440 - +1.1 425,441 - +0.1 425,521 + -0.7 425,521 + -0.2 425,521 + +0.8 425,522 - +0.4 425,522 - +0.3 425,522 - -0.1 425,522 - -1.1 425,551 + +0.7 425,552 - +0.8 425,552 - -0.1 425,660 - +0.4 425,810 - GFF3535 0.11 -0.1 425,962 - GFF3535 0.26 +0.4 425,962 - GFF3535 0.26 +0.3 425,962 - GFF3535 0.26 -0.0 426,103 + GFF3535 0.41 -0.5 426,160 + GFF3535 0.47 -0.2 426,160 + GFF3535 0.47 -0.0 426,160 + GFF3535 0.47 +0.9 426,160 + GFF3535 0.47 +0.4 426,160 + GFF3535 0.47 +0.5 426,161 - GFF3535 0.47 -0.3 426,161 - GFF3535 0.47 +1.2 426,161 - GFF3535 0.47 +0.3 426,247 + GFF3535 0.56 +0.2 426,388 + GFF3535 0.70 -0.4
Or see this region's nucleotide sequence