Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3531 and GFF3532 are separated by 122 nucleotides GFF3532 and GFF3533 are separated by 105 nucleotides GFF3533 and GFF3534 are separated by 10 nucleotides
GFF3531 - ABC transporter, at 419,649 to 421,310
GFF3531
GFF3532 - hypothetical protein, at 421,433 to 421,984
GFF3532
GFF3533 - Thymidine phosphorylase (EC 2.4.2.4), at 422,090 to 424,201
GFF3533
GFF3534 - TRAP transporter solute receptor, TAXI family, at 424,212 to 425,540
GFF3534
Position (kb) 422
423
424
425 Strain fitness (log2 ratio) -2
-1
0
1 at 421.224 kb on + strand at 421.224 kb on + strand at 421.225 kb on - strand at 421.225 kb on - strand at 421.233 kb on + strand at 421.233 kb on + strand at 421.308 kb on + strand at 421.308 kb on + strand at 421.309 kb on - strand at 421.309 kb on - strand at 421.529 kb on + strand, within GFF3532 at 421.529 kb on + strand, within GFF3532 at 421.529 kb on + strand, within GFF3532 at 421.530 kb on - strand, within GFF3532 at 421.530 kb on - strand, within GFF3532 at 421.530 kb on - strand, within GFF3532 at 421.530 kb on - strand, within GFF3532 at 422.015 kb on + strand at 422.015 kb on + strand at 422.016 kb on - strand at 422.016 kb on - strand at 422.026 kb on + strand at 422.026 kb on + strand at 422.026 kb on + strand at 422.026 kb on + strand at 422.026 kb on + strand at 422.040 kb on + strand at 422.315 kb on + strand, within GFF3533 at 422.666 kb on + strand, within GFF3533 at 422.666 kb on + strand, within GFF3533 at 422.667 kb on - strand, within GFF3533 at 422.717 kb on + strand, within GFF3533 at 422.717 kb on + strand, within GFF3533 at 422.718 kb on - strand, within GFF3533 at 422.718 kb on - strand, within GFF3533 at 423.140 kb on + strand, within GFF3533 at 423.140 kb on + strand, within GFF3533 at 423.501 kb on - strand, within GFF3533 at 423.689 kb on + strand, within GFF3533 at 423.689 kb on + strand, within GFF3533 at 423.689 kb on + strand, within GFF3533 at 424.267 kb on + strand at 424.268 kb on - strand at 424.268 kb on - strand at 424.268 kb on - strand at 424.282 kb on + strand at 424.283 kb on - strand at 424.403 kb on - strand, within GFF3534 at 424.438 kb on + strand, within GFF3534 at 424.439 kb on - strand, within GFF3534 at 424.439 kb on - strand, within GFF3534 at 424.439 kb on - strand, within GFF3534 at 424.541 kb on - strand, within GFF3534 at 424.823 kb on - strand, within GFF3534 at 424.841 kb on - strand, within GFF3534
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 421,224 + -0.0 421,224 + -0.4 421,225 - -0.2 421,225 - -0.6 421,233 + -1.3 421,233 + -0.0 421,308 + +0.3 421,308 + +0.2 421,309 - +0.2 421,309 - -0.2 421,529 + GFF3532 0.17 +0.6 421,529 + GFF3532 0.17 -2.0 421,529 + GFF3532 0.17 -0.5 421,530 - GFF3532 0.18 -0.9 421,530 - GFF3532 0.18 +0.4 421,530 - GFF3532 0.18 -1.8 421,530 - GFF3532 0.18 -1.3 422,015 + -0.5 422,015 + +0.2 422,016 - +0.8 422,016 - +0.7 422,026 + -0.5 422,026 + -0.1 422,026 + -0.0 422,026 + -0.2 422,026 + +1.0 422,040 + -0.5 422,315 + GFF3533 0.11 -0.0 422,666 + GFF3533 0.27 +0.0 422,666 + GFF3533 0.27 +0.4 422,667 - GFF3533 0.27 +0.1 422,717 + GFF3533 0.30 -0.0 422,717 + GFF3533 0.30 -0.5 422,718 - GFF3533 0.30 -0.1 422,718 - GFF3533 0.30 +0.6 423,140 + GFF3533 0.50 +0.1 423,140 + GFF3533 0.50 +0.8 423,501 - GFF3533 0.67 -2.2 423,689 + GFF3533 0.76 +0.7 423,689 + GFF3533 0.76 -0.5 423,689 + GFF3533 0.76 -0.8 424,267 + -0.1 424,268 - +0.1 424,268 - +0.0 424,268 - -1.0 424,282 + -0.4 424,283 - +0.0 424,403 - GFF3534 0.14 +0.4 424,438 + GFF3534 0.17 -1.3 424,439 - GFF3534 0.17 +0.5 424,439 - GFF3534 0.17 -0.0 424,439 - GFF3534 0.17 +0.6 424,541 - GFF3534 0.25 +0.6 424,823 - GFF3534 0.46 +1.4 424,841 - GFF3534 0.47 -0.2
Or see this region's nucleotide sequence