Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3463

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
343,470	+		GFF3462	0.61	+0.7
344,025	+				-0.2
344,058	-				-0.6
344,157	+				+0.3
344,173	-				-0.1
344,213	+				-0.1
344,213	+				+1.2
344,214	-				-0.5
344,214	-				-0.1
344,214	-				-0.2
344,214	-				-0.1
344,239	-				+0.2
344,305	+				+0.3
344,507	+		GFF3463	0.26	+0.0
344,507	+		GFF3463	0.26	-1.0
344,508	-		GFF3463	0.26	-0.2
344,508	-		GFF3463	0.26	+0.7
344,669	+		GFF3463	0.49	-0.3
344,669	+		GFF3463	0.49	+0.8
344,812	-		GFF3463	0.69	-0.3
344,855	+		GFF3463	0.75	+0.3
345,050	+				-1.0
345,051	-				+0.3
345,082	-				-1.1
345,140	+				+0.0
345,140	+				+0.5
345,141	-				-1.1
345,141	-				+0.8
345,144	-				-2.6
345,144	-				-0.6
345,212	+				+0.4
345,212	+				-0.7
345,213	-				-0.2
345,213	-				+0.0
345,213	-				+1.7
345,213	-				-0.5
345,217	-				-0.3
345,379	+				-1.2
345,386	+				-0.2
345,386	+				-0.6
345,386	+				-0.1
345,387	-				-0.7
345,387	-				+0.0
345,459	-				+0.5
345,495	+				+0.1
345,496	-				-0.4
345,496	-				-0.8
345,500	-				+0.4
345,668	+				+0.6
345,668	+				-0.6
345,669	-				-0.6
345,722	+				-1.2
345,722	+				+0.7
345,722	+				+0.5
345,723	-				+0.3
345,727	-				-0.8
345,775	+				+0.9
345,973	-				-0.8
345,973	-				+0.8