Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3416 and GFF3417 are separated by 80 nucleotides GFF3417 and GFF3418 overlap by 4 nucleotides GFF3418 and GFF3419 overlap by 1 nucleotides GFF3419 and GFF3420 overlap by 4 nucleotides
GFF3416 - Kynurenine formamidase, bacterial (EC 3.5.1.9), at 301,717 to 302,346
GFF3416
GFF3417 - Ferredoxin, at 302,427 to 302,732
GFF3417
GFF3418 - Methyltransferase (EC 2.1.1.-), at 302,729 to 303,658
GFF3418
GFF3419 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 303,658 to 304,599
GFF3419
GFF3420 - Acetylornithine aminotransferase (EC 2.6.1.11), at 304,596 to 305,795
GFF3420
Position (kb) 302
303
304 Strain fitness (log2 ratio) -2
-1
0
1 at 301.797 kb on - strand, within GFF3416 at 302.171 kb on + strand, within GFF3416 at 302.276 kb on + strand, within GFF3416 at 302.360 kb on + strand at 302.361 kb on - strand at 302.361 kb on - strand at 302.361 kb on - strand at 302.432 kb on + strand at 302.432 kb on + strand at 302.433 kb on - strand at 302.521 kb on + strand, within GFF3417 at 302.521 kb on + strand, within GFF3417 at 302.521 kb on + strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.525 kb on + strand, within GFF3417 at 302.526 kb on - strand, within GFF3417 at 302.763 kb on + strand at 302.967 kb on + strand, within GFF3418 at 302.967 kb on + strand, within GFF3418 at 302.968 kb on - strand, within GFF3418 at 303.030 kb on + strand, within GFF3418 at 303.217 kb on - strand, within GFF3418
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 301,797 - GFF3416 0.13 +0.3 302,171 + GFF3416 0.72 -1.0 302,276 + GFF3416 0.89 -0.4 302,360 + +0.5 302,361 - +0.9 302,361 - -0.4 302,361 - -0.5 302,432 + +0.1 302,432 + +0.5 302,433 - -2.0 302,521 + GFF3417 0.31 -0.5 302,521 + GFF3417 0.31 -0.7 302,521 + GFF3417 0.31 +0.9 302,522 - GFF3417 0.31 -1.0 302,522 - GFF3417 0.31 -0.4 302,522 - GFF3417 0.31 -0.2 302,522 - GFF3417 0.31 -0.4 302,522 - GFF3417 0.31 +0.7 302,525 + GFF3417 0.32 -1.2 302,526 - GFF3417 0.32 -0.0 302,763 + -0.8 302,967 + GFF3418 0.26 +0.7 302,967 + GFF3418 0.26 +0.5 302,968 - GFF3418 0.26 +0.5 303,030 + GFF3418 0.32 +0.4 303,217 - GFF3418 0.52 -0.4
Or see this region's nucleotide sequence