Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3257 and GFF3258 overlap by 4 nucleotides GFF3258 and GFF3259 are separated by 227 nucleotides GFF3259 and GFF3260 are separated by 162 nucleotides
GFF3257 - Heavy metal sensor histidine kinase, at 139,109 to 140,506
GFF3257
GFF3258 - DNA-binding heavy metal response regulator, at 140,503 to 141,186
GFF3258
GFF3259 - hypothetical protein, at 141,414 to 141,872
GFF3259
GFF3260 - hypothetical protein, at 142,035 to 143,360
GFF3260
Position (kb) 140
141
142 Strain fitness (log2 ratio) -2
-1
0
1
2 at 139.794 kb on + strand, within GFF3257 at 139.794 kb on + strand, within GFF3257 at 139.794 kb on + strand, within GFF3257 at 139.794 kb on + strand, within GFF3257 at 139.795 kb on - strand, within GFF3257 at 139.795 kb on - strand, within GFF3257 at 139.795 kb on - strand, within GFF3257 at 139.795 kb on - strand, within GFF3257 at 139.795 kb on - strand, within GFF3257 at 140.268 kb on + strand, within GFF3257 at 140.268 kb on + strand, within GFF3257 at 140.269 kb on - strand, within GFF3257 at 140.358 kb on + strand, within GFF3257 at 140.436 kb on + strand at 140.897 kb on + strand, within GFF3258 at 140.898 kb on - strand, within GFF3258 at 141.053 kb on + strand, within GFF3258 at 141.074 kb on + strand, within GFF3258 at 141.143 kb on + strand at 141.144 kb on - strand at 141.279 kb on + strand at 141.279 kb on + strand at 141.279 kb on + strand at 141.280 kb on - strand at 141.280 kb on - strand at 141.280 kb on - strand at 141.280 kb on - strand at 141.325 kb on + strand at 141.326 kb on - strand at 141.326 kb on - strand at 141.326 kb on - strand at 141.326 kb on - strand at 141.570 kb on + strand, within GFF3259 at 141.571 kb on - strand, within GFF3259 at 141.571 kb on - strand, within GFF3259 at 141.571 kb on - strand, within GFF3259
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 139,794 + GFF3257 0.49 +0.9 139,794 + GFF3257 0.49 +0.1 139,794 + GFF3257 0.49 +0.6 139,794 + GFF3257 0.49 +0.4 139,795 - GFF3257 0.49 +0.7 139,795 - GFF3257 0.49 -0.0 139,795 - GFF3257 0.49 +0.9 139,795 - GFF3257 0.49 +0.8 139,795 - GFF3257 0.49 -0.3 140,268 + GFF3257 0.83 -0.0 140,268 + GFF3257 0.83 +0.6 140,269 - GFF3257 0.83 -2.1 140,358 + GFF3257 0.89 -0.1 140,436 + +0.5 140,897 + GFF3258 0.58 +1.3 140,898 - GFF3258 0.58 -0.8 141,053 + GFF3258 0.80 -0.3 141,074 + GFF3258 0.83 -0.9 141,143 + -1.6 141,144 - +0.2 141,279 + +0.3 141,279 + -0.3 141,279 + +0.4 141,280 - +1.3 141,280 - -0.4 141,280 - -0.5 141,280 - +0.7 141,325 + -0.2 141,326 - +0.2 141,326 - -0.4 141,326 - -0.0 141,326 - +0.1 141,570 + GFF3259 0.34 -0.4 141,571 - GFF3259 0.34 +2.0 141,571 - GFF3259 0.34 -0.3 141,571 - GFF3259 0.34 +0.7
Or see this region's nucleotide sequence