Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3153 and GFF3154 are separated by 164 nucleotides GFF3154 and GFF3155 are separated by 230 nucleotides
GFF3153 - Conjugative transfer transglycosylase, at 30,026 to 30,559
GFF3153
GFF3154 - hypothetical protein, at 30,724 to 31,221
GFF3154
GFF3155 - hypothetical protein, at 31,452 to 32,297
GFF3155
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 30.132 kb on + strand, within GFF3153 at 30.133 kb on - strand, within GFF3153 at 30.147 kb on + strand, within GFF3153 at 30.147 kb on + strand, within GFF3153 at 30.147 kb on + strand, within GFF3153 at 30.148 kb on - strand, within GFF3153 at 30.148 kb on - strand, within GFF3153 at 30.148 kb on - strand, within GFF3153 at 30.204 kb on + strand, within GFF3153 at 30.204 kb on + strand, within GFF3153 at 30.204 kb on + strand, within GFF3153 at 30.204 kb on + strand, within GFF3153 at 30.205 kb on - strand, within GFF3153 at 30.205 kb on - strand, within GFF3153 at 30.205 kb on - strand, within GFF3153 at 30.205 kb on - strand, within GFF3153 at 30.448 kb on - strand, within GFF3153 at 30.623 kb on + strand at 30.624 kb on - strand at 30.725 kb on + strand at 30.726 kb on - strand at 30.774 kb on + strand, within GFF3154 at 30.774 kb on + strand, within GFF3154 at 30.774 kb on + strand, within GFF3154 at 30.775 kb on - strand, within GFF3154 at 30.775 kb on - strand, within GFF3154 at 31.109 kb on + strand, within GFF3154 at 31.110 kb on - strand, within GFF3154 at 31.281 kb on + strand at 31.282 kb on - strand at 31.394 kb on - strand at 31.394 kb on - strand at 31.695 kb on + strand, within GFF3155 at 31.695 kb on + strand, within GFF3155 at 31.696 kb on - strand, within GFF3155 at 31.696 kb on - strand, within GFF3155 at 31.705 kb on + strand, within GFF3155 at 31.711 kb on + strand, within GFF3155 at 31.712 kb on + strand, within GFF3155 at 31.712 kb on - strand, within GFF3155 at 31.780 kb on + strand, within GFF3155 at 31.780 kb on + strand, within GFF3155 at 31.780 kb on + strand, within GFF3155 at 31.781 kb on - strand, within GFF3155 at 31.945 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.076 kb on + strand, within GFF3155 at 32.077 kb on - strand, within GFF3155 at 32.077 kb on - strand, within GFF3155 at 32.116 kb on + strand, within GFF3155 at 32.117 kb on - strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.152 kb on + strand, within GFF3155 at 32.153 kb on - strand, within GFF3155 at 32.153 kb on - strand, within GFF3155 at 32.186 kb on - strand, within GFF3155
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 30,132 + GFF3153 0.20 +0.3 30,133 - GFF3153 0.20 -0.2 30,147 + GFF3153 0.23 +0.2 30,147 + GFF3153 0.23 -2.4 30,147 + GFF3153 0.23 -1.1 30,148 - GFF3153 0.23 +0.0 30,148 - GFF3153 0.23 +0.8 30,148 - GFF3153 0.23 -0.3 30,204 + GFF3153 0.33 +0.2 30,204 + GFF3153 0.33 +0.1 30,204 + GFF3153 0.33 -0.4 30,204 + GFF3153 0.33 +1.0 30,205 - GFF3153 0.34 -0.2 30,205 - GFF3153 0.34 -1.1 30,205 - GFF3153 0.34 +0.0 30,205 - GFF3153 0.34 -0.4 30,448 - GFF3153 0.79 +0.9 30,623 + +1.9 30,624 - -1.3 30,725 + -2.0 30,726 - +0.0 30,774 + GFF3154 0.10 -1.1 30,774 + GFF3154 0.10 +0.3 30,774 + GFF3154 0.10 -1.0 30,775 - GFF3154 0.10 +0.6 30,775 - GFF3154 0.10 -0.8 31,109 + GFF3154 0.77 -1.0 31,110 - GFF3154 0.78 +0.3 31,281 + +0.3 31,282 - +0.2 31,394 - +0.8 31,394 - -0.1 31,695 + GFF3155 0.29 +0.9 31,695 + GFF3155 0.29 +0.6 31,696 - GFF3155 0.29 +0.2 31,696 - GFF3155 0.29 -2.9 31,705 + GFF3155 0.30 -0.6 31,711 + GFF3155 0.31 -1.0 31,712 + GFF3155 0.31 +0.6 31,712 - GFF3155 0.31 -0.4 31,780 + GFF3155 0.39 -0.4 31,780 + GFF3155 0.39 -0.4 31,780 + GFF3155 0.39 -0.6 31,781 - GFF3155 0.39 +1.1 31,945 + GFF3155 0.58 +0.6 32,076 + GFF3155 0.74 +0.1 32,076 + GFF3155 0.74 -0.6 32,076 + GFF3155 0.74 -0.6 32,076 + GFF3155 0.74 -1.4 32,077 - GFF3155 0.74 -0.2 32,077 - GFF3155 0.74 +0.4 32,116 + GFF3155 0.78 +0.1 32,117 - GFF3155 0.79 -0.1 32,152 + GFF3155 0.83 -0.1 32,152 + GFF3155 0.83 -0.2 32,152 + GFF3155 0.83 -0.4 32,152 + GFF3155 0.83 -0.2 32,153 - GFF3155 0.83 -1.0 32,153 - GFF3155 0.83 -0.1 32,186 - GFF3155 0.87 +0.2
Or see this region's nucleotide sequence