Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2758 and GFF2759 are separated by 10 nucleotides GFF2759 and GFF2760 overlap by 4 nucleotides GFF2760 and GFF2761 are separated by 45 nucleotides
GFF2758 - Adenylate cyclase (EC 4.6.1.1), at 356,336 to 357,889
GFF2758
GFF2759 - Glutathione S-transferase (EC 2.5.1.18), at 357,900 to 358,517
GFF2759
GFF2760 - Glutathione S-transferase (EC 2.5.1.18), at 358,514 to 359,263
GFF2760
GFF2761 - protein of unknown function DUF1501, at 359,309 to 360,769
GFF2761
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 357.615 kb on - strand, within GFF2758 at 357.626 kb on + strand, within GFF2758 at 358.207 kb on + strand, within GFF2759 at 358.208 kb on - strand, within GFF2759 at 358.208 kb on - strand, within GFF2759 at 358.387 kb on + strand, within GFF2759 at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.508 kb on - strand at 358.508 kb on - strand at 358.508 kb on - strand at 358.774 kb on - strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.789 kb on - strand, within GFF2760 at 358.789 kb on - strand, within GFF2760 at 358.789 kb on - strand, within GFF2760 at 359.013 kb on + strand, within GFF2760 at 359.013 kb on + strand, within GFF2760 at 359.013 kb on + strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.106 kb on + strand, within GFF2760 at 359.157 kb on + strand, within GFF2760 at 359.220 kb on + strand at 359.220 kb on + strand at 359.221 kb on - strand at 359.221 kb on - strand at 359.221 kb on - strand at 359.245 kb on + strand at 359.266 kb on + strand at 359.318 kb on - strand at 359.318 kb on - strand at 359.318 kb on - strand at 359.318 kb on - strand at 359.338 kb on - strand at 359.338 kb on - strand at 359.427 kb on + strand at 359.428 kb on - strand at 359.532 kb on + strand, within GFF2761 at 359.533 kb on - strand, within GFF2761 at 359.533 kb on - strand, within GFF2761 at 359.533 kb on - strand, within GFF2761 at 359.688 kb on + strand, within GFF2761 at 359.967 kb on + strand, within GFF2761 at 359.967 kb on + strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 360.042 kb on + strand, within GFF2761 at 360.042 kb on + strand, within GFF2761 at 360.042 kb on + strand, within GFF2761 at 360.043 kb on - strand, within GFF2761 at 360.043 kb on - strand, within GFF2761 at 360.043 kb on - strand, within GFF2761 at 360.043 kb on - strand, within GFF2761 at 360.096 kb on + strand, within GFF2761
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 357,615 - GFF2758 0.82 +0.1 357,626 + GFF2758 0.83 -0.8 358,207 + GFF2759 0.50 -0.4 358,208 - GFF2759 0.50 -0.2 358,208 - GFF2759 0.50 -0.2 358,387 + GFF2759 0.79 +0.0 358,507 + -0.2 358,507 + -0.4 358,507 + -1.1 358,507 + +0.8 358,507 + -0.0 358,507 + +0.7 358,507 + +1.0 358,507 + -0.7 358,508 - +0.2 358,508 - +1.3 358,508 - +2.3 358,774 - GFF2760 0.35 -0.8 358,788 + GFF2760 0.37 -0.4 358,788 + GFF2760 0.37 +0.2 358,788 + GFF2760 0.37 -1.0 358,788 + GFF2760 0.37 -1.4 358,789 - GFF2760 0.37 +0.1 358,789 - GFF2760 0.37 -0.3 358,789 - GFF2760 0.37 +0.2 359,013 + GFF2760 0.67 -0.1 359,013 + GFF2760 0.67 +0.1 359,013 + GFF2760 0.67 -0.2 359,014 - GFF2760 0.67 -0.1 359,014 - GFF2760 0.67 -0.0 359,014 - GFF2760 0.67 +0.0 359,014 - GFF2760 0.67 -0.6 359,106 + GFF2760 0.79 +1.5 359,157 + GFF2760 0.86 -2.2 359,220 + -0.3 359,220 + -0.5 359,221 - -0.6 359,221 - -0.4 359,221 - +0.2 359,245 + -0.1 359,266 + +0.3 359,318 - +3.1 359,318 - -0.5 359,318 - -0.3 359,318 - +0.5 359,338 - +0.4 359,338 - -0.5 359,427 + -0.2 359,428 - -0.3 359,532 + GFF2761 0.15 -0.5 359,533 - GFF2761 0.15 -0.2 359,533 - GFF2761 0.15 -0.8 359,533 - GFF2761 0.15 -0.8 359,688 + GFF2761 0.26 +0.2 359,967 + GFF2761 0.45 -0.4 359,967 + GFF2761 0.45 -0.8 359,968 - GFF2761 0.45 -0.1 359,968 - GFF2761 0.45 -0.3 359,968 - GFF2761 0.45 -0.5 359,968 - GFF2761 0.45 -0.2 359,968 - GFF2761 0.45 +0.2 360,042 + GFF2761 0.50 -0.2 360,042 + GFF2761 0.50 +0.4 360,042 + GFF2761 0.50 -0.8 360,043 - GFF2761 0.50 +0.8 360,043 - GFF2761 0.50 +1.1 360,043 - GFF2761 0.50 -0.0 360,043 - GFF2761 0.50 -1.8 360,096 + GFF2761 0.54 +0.1
Or see this region's nucleotide sequence