Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2600 and GFF2601 overlap by 4 nucleotides GFF2601 and GFF2602 are separated by 76 nucleotides GFF2602 and GFF2603 are separated by 125 nucleotides
GFF2600 - tRNA-specific 2-thiouridylase MnmA, at 192,226 to 193,377
GFF2600
GFF2601 - FIG00787877: hypothetical protein, at 193,374 to 194,717
GFF2601
GFF2602 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 194,794 to 195,300
GFF2602
GFF2603 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 195,426 to 196,526
GFF2603
Position (kb) 193
194
195 Strain fitness (log2 ratio) -2
-1
0
1 at 192.604 kb on + strand, within GFF2600 at 192.677 kb on - strand, within GFF2600 at 193.516 kb on + strand, within GFF2601 at 193.516 kb on + strand, within GFF2601 at 193.517 kb on - strand, within GFF2601 at 193.537 kb on + strand, within GFF2601 at 193.538 kb on - strand, within GFF2601 at 193.538 kb on - strand, within GFF2601 at 193.538 kb on - strand, within GFF2601 at 193.538 kb on - strand, within GFF2601 at 193.540 kb on + strand, within GFF2601 at 193.540 kb on + strand, within GFF2601 at 193.541 kb on - strand, within GFF2601 at 193.541 kb on - strand, within GFF2601 at 193.867 kb on + strand, within GFF2601 at 193.868 kb on - strand, within GFF2601 at 194.748 kb on + strand at 194.749 kb on - strand at 195.020 kb on + strand, within GFF2602 at 195.021 kb on - strand, within GFF2602 at 195.021 kb on - strand, within GFF2602 at 195.077 kb on + strand, within GFF2602 at 195.077 kb on + strand, within GFF2602 at 195.302 kb on - strand at 195.391 kb on + strand at 195.391 kb on + strand at 195.392 kb on - strand at 195.392 kb on - strand at 195.392 kb on - strand at 195.392 kb on - strand at 195.403 kb on + strand at 195.404 kb on - strand at 195.404 kb on - strand at 195.410 kb on - strand at 195.471 kb on + strand at 195.471 kb on + strand at 195.472 kb on - strand at 195.543 kb on + strand, within GFF2603 at 195.543 kb on + strand, within GFF2603 at 195.544 kb on - strand, within GFF2603
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 192,604 + GFF2600 0.33 -0.0 192,677 - GFF2600 0.39 -0.4 193,516 + GFF2601 0.11 -0.1 193,516 + GFF2601 0.11 -1.6 193,517 - GFF2601 0.11 +0.7 193,537 + GFF2601 0.12 +0.7 193,538 - GFF2601 0.12 -0.8 193,538 - GFF2601 0.12 -0.1 193,538 - GFF2601 0.12 -0.2 193,538 - GFF2601 0.12 -0.2 193,540 + GFF2601 0.12 +0.9 193,540 + GFF2601 0.12 +0.4 193,541 - GFF2601 0.12 -0.2 193,541 - GFF2601 0.12 -0.6 193,867 + GFF2601 0.37 -1.1 193,868 - GFF2601 0.37 -0.1 194,748 + +1.2 194,749 - +0.4 195,020 + GFF2602 0.45 -0.5 195,021 - GFF2602 0.45 -0.2 195,021 - GFF2602 0.45 +0.3 195,077 + GFF2602 0.56 +0.6 195,077 + GFF2602 0.56 -0.8 195,302 - +0.3 195,391 + +0.0 195,391 + +0.3 195,392 - -0.1 195,392 - -1.2 195,392 - +0.2 195,392 - +0.5 195,403 + -0.0 195,404 - -0.4 195,404 - -0.5 195,410 - -1.0 195,471 + +0.6 195,471 + -1.0 195,472 - -0.4 195,543 + GFF2603 0.11 -2.2 195,543 + GFF2603 0.11 +0.1 195,544 - GFF2603 0.11 -0.0
Or see this region's nucleotide sequence