Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2547 and GFF2548 overlap by 4 nucleotides GFF2548 and GFF2549 are separated by 17 nucleotides
GFF2547 - hypothetical protein, at 134,376 to 135,527
GFF2547
GFF2548 - Glycosyltransferase (EC 2.4.1.-), at 135,524 to 136,636
GFF2548
GFF2549 - hypothetical protein, at 136,654 to 137,640
GFF2549
Position (kb) 135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.708 kb on - strand, within GFF2547 at 135.067 kb on + strand, within GFF2547 at 135.113 kb on - strand, within GFF2547 at 135.181 kb on + strand, within GFF2547 at 135.181 kb on + strand, within GFF2547 at 135.181 kb on + strand, within GFF2547 at 135.182 kb on - strand, within GFF2547 at 135.328 kb on + strand, within GFF2547 at 135.329 kb on - strand, within GFF2547 at 135.329 kb on - strand, within GFF2547 at 135.467 kb on - strand at 135.467 kb on - strand at 135.487 kb on + strand at 135.488 kb on - strand at 135.488 kb on - strand at 135.488 kb on - strand at 136.077 kb on + strand, within GFF2548 at 136.078 kb on - strand, within GFF2548 at 136.078 kb on - strand, within GFF2548 at 136.078 kb on - strand, within GFF2548 at 136.204 kb on - strand, within GFF2548 at 136.518 kb on + strand, within GFF2548 at 136.518 kb on + strand, within GFF2548 at 136.519 kb on - strand, within GFF2548 at 136.588 kb on - strand at 136.611 kb on + strand at 136.612 kb on - strand at 136.612 kb on - strand at 136.629 kb on + strand at 136.629 kb on + strand at 136.630 kb on - strand at 136.630 kb on - strand at 136.630 kb on - strand at 136.779 kb on - strand, within GFF2549 at 136.779 kb on - strand, within GFF2549 at 136.784 kb on + strand, within GFF2549 at 136.829 kb on + strand, within GFF2549 at 136.829 kb on + strand, within GFF2549 at 136.829 kb on + strand, within GFF2549 at 136.829 kb on - strand, within GFF2549 at 136.830 kb on - strand, within GFF2549 at 136.934 kb on + strand, within GFF2549 at 136.947 kb on - strand, within GFF2549 at 137.120 kb on + strand, within GFF2549 at 137.121 kb on - strand, within GFF2549 at 137.138 kb on + strand, within GFF2549 at 137.139 kb on - strand, within GFF2549 at 137.139 kb on - strand, within GFF2549 at 137.139 kb on - strand, within GFF2549 at 137.183 kb on + strand, within GFF2549 at 137.184 kb on - strand, within GFF2549 at 137.195 kb on + strand, within GFF2549 at 137.196 kb on - strand, within GFF2549 at 137.256 kb on - strand, within GFF2549 at 137.256 kb on - strand, within GFF2549 at 137.270 kb on + strand, within GFF2549 at 137.271 kb on - strand, within GFF2549 at 137.402 kb on + strand, within GFF2549 at 137.430 kb on - strand, within GFF2549
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 134,708 - GFF2547 0.29 -1.3 135,067 + GFF2547 0.60 -0.3 135,113 - GFF2547 0.64 +1.8 135,181 + GFF2547 0.70 -3.1 135,181 + GFF2547 0.70 +0.7 135,181 + GFF2547 0.70 +0.1 135,182 - GFF2547 0.70 -0.0 135,328 + GFF2547 0.83 -0.0 135,329 - GFF2547 0.83 -0.2 135,329 - GFF2547 0.83 -0.2 135,467 - +0.0 135,467 - -0.2 135,487 + -0.2 135,488 - -0.1 135,488 - -0.2 135,488 - -1.4 136,077 + GFF2548 0.50 -0.2 136,078 - GFF2548 0.50 -0.1 136,078 - GFF2548 0.50 +0.2 136,078 - GFF2548 0.50 -0.6 136,204 - GFF2548 0.61 +0.7 136,518 + GFF2548 0.89 +0.7 136,518 + GFF2548 0.89 -0.6 136,519 - GFF2548 0.89 +0.2 136,588 - +0.2 136,611 + +0.3 136,612 - +0.1 136,612 - -0.3 136,629 + -1.7 136,629 + -0.8 136,630 - -0.4 136,630 - +0.6 136,630 - -0.2 136,779 - GFF2549 0.13 -0.0 136,779 - GFF2549 0.13 +1.8 136,784 + GFF2549 0.13 -0.4 136,829 + GFF2549 0.18 -0.4 136,829 + GFF2549 0.18 +0.6 136,829 + GFF2549 0.18 +0.5 136,829 - GFF2549 0.18 -1.0 136,830 - GFF2549 0.18 +0.4 136,934 + GFF2549 0.28 +0.4 136,947 - GFF2549 0.30 +0.4 137,120 + GFF2549 0.47 +0.6 137,121 - GFF2549 0.47 -0.0 137,138 + GFF2549 0.49 -1.0 137,139 - GFF2549 0.49 -0.8 137,139 - GFF2549 0.49 +0.0 137,139 - GFF2549 0.49 -0.6 137,183 + GFF2549 0.54 -0.2 137,184 - GFF2549 0.54 +1.8 137,195 + GFF2549 0.55 -1.4 137,196 - GFF2549 0.55 +1.4 137,256 - GFF2549 0.61 -0.7 137,256 - GFF2549 0.61 -0.9 137,270 + GFF2549 0.62 +0.6 137,271 - GFF2549 0.63 -0.5 137,402 + GFF2549 0.76 -0.9 137,430 - GFF2549 0.79 +0.1
Or see this region's nucleotide sequence