Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2495 and GFF2496 are separated by 23 nucleotides GFF2496 and GFF2497 are separated by 4 nucleotides
GFF2495 - DNA topoisomerase III, Burkholderia type (EC 5.99.1.2), at 80,165 to 83,107
GFF2495
GFF2496 - Glutathione S-transferase (EC 2.5.1.18), at 83,131 to 83,781
GFF2496
GFF2497 - Sensor protein basS/pmrB (EC 2.7.3.-), at 83,786 to 85,270
GFF2497
Position (kb) 83
84 Strain fitness (log2 ratio) -1
0
1
2 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.499 kb on + strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.500 kb on - strand, within GFF2495 at 82.970 kb on + strand at 82.970 kb on + strand at 82.970 kb on + strand at 82.970 kb on + strand at 82.971 kb on - strand at 82.971 kb on - strand at 82.971 kb on - strand at 82.971 kb on - strand at 83.146 kb on + strand at 83.147 kb on - strand at 83.147 kb on - strand at 83.147 kb on - strand at 83.147 kb on - strand at 83.260 kb on + strand, within GFF2496 at 83.261 kb on - strand, within GFF2496 at 83.519 kb on - strand, within GFF2496 at 83.533 kb on + strand, within GFF2496 at 83.620 kb on + strand, within GFF2496 at 83.621 kb on - strand, within GFF2496 at 83.621 kb on - strand, within GFF2496 at 83.762 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.764 kb on + strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.765 kb on - strand at 83.961 kb on + strand, within GFF2497 at 83.961 kb on + strand, within GFF2497 at 83.962 kb on - strand, within GFF2497 at 83.962 kb on - strand, within GFF2497 at 84.093 kb on + strand, within GFF2497 at 84.093 kb on + strand, within GFF2497 at 84.093 kb on + strand, within GFF2497 at 84.094 kb on - strand, within GFF2497 at 84.094 kb on - strand, within GFF2497
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 82,499 + GFF2495 0.79 +0.4 82,499 + GFF2495 0.79 +1.0 82,499 + GFF2495 0.79 -0.0 82,499 + GFF2495 0.79 +0.3 82,499 + GFF2495 0.79 +0.5 82,499 + GFF2495 0.79 -0.6 82,499 + GFF2495 0.79 -0.4 82,499 + GFF2495 0.79 -0.2 82,499 + GFF2495 0.79 +0.1 82,499 + GFF2495 0.79 +0.2 82,499 + GFF2495 0.79 +0.2 82,499 + GFF2495 0.79 -0.8 82,499 + GFF2495 0.79 +0.3 82,499 + GFF2495 0.79 +0.3 82,500 - GFF2495 0.79 +0.6 82,500 - GFF2495 0.79 +0.3 82,500 - GFF2495 0.79 -0.0 82,500 - GFF2495 0.79 +0.7 82,500 - GFF2495 0.79 -0.4 82,500 - GFF2495 0.79 +0.6 82,500 - GFF2495 0.79 -0.3 82,970 + -0.6 82,970 + -0.7 82,970 + -0.6 82,970 + +1.1 82,971 - +0.4 82,971 - +0.3 82,971 - -0.2 82,971 - +0.2 83,146 + +0.0 83,147 - +0.6 83,147 - +0.2 83,147 - +0.7 83,147 - -0.4 83,260 + GFF2496 0.20 +0.3 83,261 - GFF2496 0.20 -1.6 83,519 - GFF2496 0.60 +0.2 83,533 + GFF2496 0.62 -0.5 83,620 + GFF2496 0.75 -0.4 83,621 - GFF2496 0.75 +0.1 83,621 - GFF2496 0.75 -0.4 83,762 + -0.2 83,764 + +2.1 83,764 + -0.0 83,764 + -0.2 83,764 + -0.3 83,764 + +0.3 83,764 + -0.1 83,765 - +0.1 83,765 - -0.4 83,765 - +0.8 83,765 - +0.7 83,765 - -0.0 83,961 + GFF2497 0.12 -0.5 83,961 + GFF2497 0.12 -0.8 83,962 - GFF2497 0.12 -0.7 83,962 - GFF2497 0.12 -0.4 84,093 + GFF2497 0.21 +0.1 84,093 + GFF2497 0.21 +2.0 84,093 + GFF2497 0.21 -0.4 84,094 - GFF2497 0.21 -0.7 84,094 - GFF2497 0.21 -0.5
Or see this region's nucleotide sequence