Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2480

Experiment: Ying_Nucleobase14 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2478 and GFF2479 overlap by 4 nucleotidesGFF2479 and GFF2480 overlap by 4 nucleotidesGFF2480 and GFF2481 are separated by 85 nucleotides GFF2478 - Hemin ABC transporter, permease protein, at 60,986 to 62,068 GFF2478 GFF2479 - ABC-type hemin transport system, ATPase component, at 62,065 to 63,012 GFF2479 GFF2480 - hypothetical protein, at 63,009 to 63,431 GFF2480 GFF2481 - putative exported protein, at 63,517 to 64,608 GFF2481 Position (kb) 63 64Strain fitness (log2 ratio) -1 0 1at 62.822 kb on - strand, within GFF2479at 63.518 kb on + strandat 63.518 kb on + strandat 63.519 kb on - strandat 63.519 kb on - strandat 63.519 kb on - strandat 63.519 kb on - strandat 63.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1
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62,822 - GFF2479 0.80 -0.1
63,518 + -0.4
63,518 + +0.1
63,519 - +0.6
63,519 - -0.5
63,519 - +0.3
63,519 - -1.0
63,519 - +0.6

Or see this region's nucleotide sequence