Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2427

Experiment: Ying_Nucleobase14 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2425 and GFF2426 are separated by 122 nucleotidesGFF2426 and GFF2427 are separated by 30 nucleotidesGFF2427 and GFF2428 are separated by 14 nucleotidesGFF2428 and GFF2429 overlap by 4 nucleotides GFF2425 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,883 to 5,626 GFF2425 GFF2426 - Sugar phosphate isomerases/epimerases, at 5,749 to 6,501 GFF2426 GFF2427 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 6,532 to 7,566 GFF2427 GFF2428 - TRAP-type C4-dicarboxylate transport system, small permease component, at 7,581 to 8,162 GFF2428 GFF2429 - TRAP-type C4-dicarboxylate transport system, large permease component, at 8,159 to 9,439 GFF2429 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.621 kb on + strandat 5.621 kb on + strandat 5.622 kb on - strandat 5.622 kb on - strandat 5.622 kb on - strandat 6.075 kb on - strand, within GFF2426at 6.106 kb on + strand, within GFF2426at 6.106 kb on + strand, within GFF2426at 6.106 kb on + strand, within GFF2426at 6.106 kb on + strand, within GFF2426at 6.107 kb on - strand, within GFF2426at 6.159 kb on + strand, within GFF2426at 6.160 kb on - strand, within GFF2426at 6.238 kb on + strand, within GFF2426at 6.239 kb on - strand, within GFF2426at 6.535 kb on + strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.536 kb on - strandat 6.547 kb on + strandat 6.547 kb on + strandat 6.548 kb on - strandat 6.548 kb on - strandat 6.548 kb on - strandat 6.661 kb on + strand, within GFF2427at 6.661 kb on + strand, within GFF2427at 6.813 kb on + strand, within GFF2427at 6.985 kb on - strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.093 kb on + strand, within GFF2427at 7.094 kb on - strand, within GFF2427at 7.153 kb on + strand, within GFF2427at 7.154 kb on - strand, within GFF2427at 7.226 kb on - strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.240 kb on + strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.241 kb on - strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.264 kb on + strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.265 kb on - strand, within GFF2427at 7.498 kb on + strandat 7.498 kb on + strandat 7.498 kb on + strandat 7.499 kb on - strandat 7.565 kb on - strandat 7.565 kb on - strandat 7.605 kb on + strandat 7.965 kb on + strand, within GFF2428at 7.965 kb on + strand, within GFF2428at 7.965 kb on + strand, within GFF2428at 7.965 kb on + strand, within GFF2428at 8.153 kb on + strandat 8.154 kb on - strandat 8.154 kb on - strandat 8.197 kb on + strandat 8.198 kb on - strandat 8.222 kb on + strandat 8.223 kb on - strandat 8.344 kb on + strand, within GFF2429at 8.345 kb on - strand, within GFF2429at 8.345 kb on - strand, within GFF2429at 8.441 kb on + strand, within GFF2429at 8.442 kb on - strand, within GFF2429at 8.442 kb on - strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.526 kb on + strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.527 kb on - strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.530 kb on + strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429at 8.531 kb on - strand, within GFF2429

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1
remove
5,621 + +1.1
5,621 + -0.8
5,622 - +0.2
5,622 - -2.6
5,622 - -0.9
6,075 - GFF2426 0.43 +0.5
6,106 + GFF2426 0.47 -0.8
6,106 + GFF2426 0.47 +0.1
6,106 + GFF2426 0.47 +0.8
6,106 + GFF2426 0.47 +1.1
6,107 - GFF2426 0.48 +0.1
6,159 + GFF2426 0.54 -0.4
6,160 - GFF2426 0.55 +0.1
6,238 + GFF2426 0.65 -0.2
6,239 - GFF2426 0.65 -1.2
6,535 + +0.1
6,536 - -1.0
6,536 - -0.1
6,536 - +0.1
6,536 - +1.1
6,536 - +0.1
6,536 - +0.6
6,536 - -1.2
6,547 + +0.6
6,547 + +1.9
6,548 - +0.4
6,548 - -0.0
6,548 - +0.4
6,661 + GFF2427 0.12 -1.1
6,661 + GFF2427 0.12 -0.3
6,813 + GFF2427 0.27 -1.0
6,985 - GFF2427 0.44 +0.4
7,093 + GFF2427 0.54 +0.2
7,093 + GFF2427 0.54 +0.4
7,093 + GFF2427 0.54 -0.0
7,093 + GFF2427 0.54 +0.0
7,094 - GFF2427 0.54 +0.2
7,153 + GFF2427 0.60 -0.1
7,154 - GFF2427 0.60 -0.9
7,226 - GFF2427 0.67 -0.4
7,240 + GFF2427 0.68 -0.6
7,240 + GFF2427 0.68 -0.3
7,240 + GFF2427 0.68 -0.8
7,240 + GFF2427 0.68 +0.3
7,240 + GFF2427 0.68 -0.4
7,240 + GFF2427 0.68 +0.2
7,240 + GFF2427 0.68 -0.5
7,241 - GFF2427 0.69 +1.0
7,241 - GFF2427 0.69 +0.4
7,241 - GFF2427 0.69 -0.0
7,241 - GFF2427 0.69 -1.2
7,264 + GFF2427 0.71 -1.0
7,264 + GFF2427 0.71 -0.2
7,264 + GFF2427 0.71 +0.0
7,264 + GFF2427 0.71 -1.6
7,264 + GFF2427 0.71 -0.2
7,264 + GFF2427 0.71 -0.3
7,264 + GFF2427 0.71 +0.4
7,264 + GFF2427 0.71 -0.7
7,265 - GFF2427 0.71 +0.1
7,265 - GFF2427 0.71 +0.4
7,265 - GFF2427 0.71 +0.4
7,265 - GFF2427 0.71 -0.6
7,265 - GFF2427 0.71 -0.5
7,265 - GFF2427 0.71 -0.4
7,265 - GFF2427 0.71 -0.4
7,498 + +0.8
7,498 + -1.0
7,498 + -0.4
7,499 - +0.6
7,565 - +2.3
7,565 - +1.0
7,605 + +0.1
7,965 + GFF2428 0.66 -0.4
7,965 + GFF2428 0.66 -0.6
7,965 + GFF2428 0.66 +1.0
7,965 + GFF2428 0.66 -0.1
8,153 + -1.1
8,154 - -0.1
8,154 - -0.1
8,197 + +0.1
8,198 - +0.4
8,222 + +0.3
8,223 - -0.6
8,344 + GFF2429 0.14 -0.5
8,345 - GFF2429 0.15 -0.1
8,345 - GFF2429 0.15 +0.4
8,441 + GFF2429 0.22 -0.2
8,442 - GFF2429 0.22 -0.4
8,442 - GFF2429 0.22 +0.2
8,526 + GFF2429 0.29 +0.0
8,526 + GFF2429 0.29 -0.7
8,526 + GFF2429 0.29 +0.1
8,526 + GFF2429 0.29 -0.4
8,526 + GFF2429 0.29 +0.0
8,527 - GFF2429 0.29 +0.1
8,527 - GFF2429 0.29 +0.0
8,527 - GFF2429 0.29 +0.6
8,527 - GFF2429 0.29 -0.8
8,527 - GFF2429 0.29 -0.1
8,530 + GFF2429 0.29 -0.5
8,530 + GFF2429 0.29 -0.2
8,530 + GFF2429 0.29 +1.1
8,530 + GFF2429 0.29 -0.2
8,530 + GFF2429 0.29 -0.6
8,530 + GFF2429 0.29 -0.0
8,530 + GFF2429 0.29 -0.2
8,530 + GFF2429 0.29 -0.0
8,531 - GFF2429 0.29 +0.7
8,531 - GFF2429 0.29 -0.8
8,531 - GFF2429 0.29 +0.1
8,531 - GFF2429 0.29 +0.3
8,531 - GFF2429 0.29 +0.6
8,531 - GFF2429 0.29 +0.3
8,531 - GFF2429 0.29 +0.4
8,531 - GFF2429 0.29 -1.0
8,531 - GFF2429 0.29 -0.4
8,531 - GFF2429 0.29 +0.1
8,531 - GFF2429 0.29 -0.4
8,531 - GFF2429 0.29 -0.0
8,531 - GFF2429 0.29 +0.8
8,531 - GFF2429 0.29 +0.2
8,531 - GFF2429 0.29 -1.0
8,531 - GFF2429 0.29 +0.1
8,531 - GFF2429 0.29 -0.2
8,531 - GFF2429 0.29 -1.6

Or see this region's nucleotide sequence