Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF224 and GFF225 are separated by 13 nucleotides GFF225 and GFF226 are separated by 33 nucleotides GFF226 and GFF227 are separated by 49 nucleotides
GFF224 - Magnesium and cobalt efflux protein CorC, at 245,665 to 246,984
GFF224
GFF225 - DinG family ATP-dependent helicase CPE1197, at 246,998 to 249,274
GFF225
GFF226 - hypothetical protein, at 249,308 to 250,111
GFF226
GFF227 - FIG028593: membrane protein, at 250,161 to 250,712
GFF227
Position (kb) 246
247
248
249
250 Strain fitness (log2 ratio) -2
-1
0
1 at 246.005 kb on + strand, within GFF224 at 246.005 kb on + strand, within GFF224 at 246.006 kb on - strand, within GFF224 at 246.601 kb on + strand, within GFF224 at 246.601 kb on + strand, within GFF224 at 246.799 kb on + strand, within GFF224 at 246.800 kb on - strand, within GFF224 at 246.800 kb on - strand, within GFF224 at 247.143 kb on + strand at 247.143 kb on + strand at 247.143 kb on + strand at 247.149 kb on + strand at 247.149 kb on + strand at 247.150 kb on - strand at 247.156 kb on - strand at 247.440 kb on + strand, within GFF225 at 247.441 kb on - strand, within GFF225 at 247.467 kb on + strand, within GFF225 at 247.468 kb on - strand, within GFF225 at 247.653 kb on + strand, within GFF225 at 247.653 kb on + strand, within GFF225 at 247.653 kb on + strand, within GFF225 at 247.653 kb on + strand, within GFF225 at 247.654 kb on - strand, within GFF225 at 247.654 kb on - strand, within GFF225 at 248.109 kb on + strand, within GFF225 at 248.109 kb on + strand, within GFF225 at 248.110 kb on - strand, within GFF225 at 248.274 kb on + strand, within GFF225 at 248.274 kb on + strand, within GFF225 at 248.275 kb on - strand, within GFF225 at 248.275 kb on - strand, within GFF225 at 248.275 kb on - strand, within GFF225 at 248.275 kb on - strand, within GFF225 at 248.278 kb on - strand, within GFF225 at 248.278 kb on - strand, within GFF225 at 248.376 kb on + strand, within GFF225 at 248.376 kb on + strand, within GFF225 at 248.377 kb on - strand, within GFF225 at 248.377 kb on - strand, within GFF225 at 248.538 kb on + strand, within GFF225 at 248.538 kb on + strand, within GFF225 at 248.538 kb on + strand, within GFF225 at 248.539 kb on - strand, within GFF225 at 248.781 kb on + strand, within GFF225 at 248.802 kb on - strand, within GFF225 at 248.874 kb on + strand, within GFF225 at 248.874 kb on + strand, within GFF225 at 248.874 kb on + strand, within GFF225 at 248.931 kb on + strand, within GFF225 at 249.294 kb on + strand at 249.296 kb on + strand at 249.297 kb on - strand at 249.297 kb on - strand at 249.297 kb on - strand at 249.297 kb on - strand at 249.365 kb on + strand at 249.365 kb on + strand at 249.870 kb on - strand, within GFF226 at 249.896 kb on + strand, within GFF226 at 250.231 kb on - strand, within GFF227
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 246,005 + GFF224 0.26 +0.0 246,005 + GFF224 0.26 +1.2 246,006 - GFF224 0.26 +0.1 246,601 + GFF224 0.71 -0.9 246,601 + GFF224 0.71 +0.4 246,799 + GFF224 0.86 +0.5 246,800 - GFF224 0.86 -0.4 246,800 - GFF224 0.86 +0.2 247,143 + -1.0 247,143 + -0.2 247,143 + -0.1 247,149 + -0.7 247,149 + -0.2 247,150 - -0.2 247,156 - -0.7 247,440 + GFF225 0.19 -0.0 247,441 - GFF225 0.19 +0.4 247,467 + GFF225 0.21 -1.1 247,468 - GFF225 0.21 -0.1 247,653 + GFF225 0.29 +0.5 247,653 + GFF225 0.29 +0.1 247,653 + GFF225 0.29 -0.4 247,653 + GFF225 0.29 +0.0 247,654 - GFF225 0.29 +1.1 247,654 - GFF225 0.29 -0.1 248,109 + GFF225 0.49 -0.7 248,109 + GFF225 0.49 -1.8 248,110 - GFF225 0.49 -1.4 248,274 + GFF225 0.56 +0.7 248,274 + GFF225 0.56 -1.7 248,275 - GFF225 0.56 -0.7 248,275 - GFF225 0.56 -0.1 248,275 - GFF225 0.56 -0.5 248,275 - GFF225 0.56 +0.0 248,278 - GFF225 0.56 -0.8 248,278 - GFF225 0.56 -0.8 248,376 + GFF225 0.61 +0.7 248,376 + GFF225 0.61 -0.2 248,377 - GFF225 0.61 -0.7 248,377 - GFF225 0.61 -0.6 248,538 + GFF225 0.68 +1.1 248,538 + GFF225 0.68 +0.4 248,538 + GFF225 0.68 +0.0 248,539 - GFF225 0.68 +0.5 248,781 + GFF225 0.78 -1.3 248,802 - GFF225 0.79 +0.5 248,874 + GFF225 0.82 -0.1 248,874 + GFF225 0.82 -0.5 248,874 + GFF225 0.82 -0.7 248,931 + GFF225 0.85 +0.0 249,294 + -0.2 249,296 + +0.7 249,297 - +0.6 249,297 - +0.1 249,297 - +0.1 249,297 - -0.3 249,365 + +0.3 249,365 + +0.3 249,870 - GFF226 0.70 -0.1 249,896 + GFF226 0.73 +0.1 250,231 - GFF227 0.13 -2.3
Or see this region's nucleotide sequence