Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2171

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,063,559	-		GFF2170	0.65	+1.6
1,063,630	-		GFF2170	0.69	-0.3
1,063,642	+		GFF2170	0.69	-0.1
1,063,748	-		GFF2170	0.74	+0.0
1,063,840	+		GFF2170	0.79	+1.8
1,063,841	-		GFF2170	0.79	-1.8
1,064,394	+				+0.4
1,064,395	-				-0.7
1,064,409	+				-0.3
1,064,584	-		GFF2171	0.17	-2.3
1,064,584	-		GFF2171	0.17	+0.3
1,064,997	+		GFF2171	0.41	+0.3
1,064,997	+		GFF2171	0.41	+1.2
1,064,998	-		GFF2171	0.41	+1.6
1,065,132	+		GFF2171	0.49	-0.7
1,065,132	+		GFF2171	0.49	-0.6
1,065,133	-		GFF2171	0.49	-0.4
1,065,177	+		GFF2171	0.52	-1.2
1,065,567	+		GFF2171	0.74	+0.6
1,065,568	-		GFF2171	0.74	+0.6
1,065,588	+		GFF2171	0.75	-1.4
1,065,625	-		GFF2171	0.77	-0.3
1,065,837	+		GFF2171	0.89	+0.7
1,065,924	+				+0.4
1,065,924	+				-0.7
1,065,924	+				-0.1