Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2094

Experiment: Ying_Nucleobase14 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2093 and GFF2094 are separated by 42 nucleotidesGFF2094 and GFF2095 overlap by 4 nucleotidesGFF2095 and GFF2096 are separated by 251 nucleotides GFF2093 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 980,141 to 981,169 GFF2093 GFF2094 - TRAP-type C4-dicarboxylate transport system, large permease component, at 981,212 to 982,489 GFF2094 GFF2095 - TRAP-type C4-dicarboxylate transport system, small permease component, at 982,486 to 983,016 GFF2095 GFF2096 - D-2-hydroxyglutarate dehydrogenase, at 983,268 to 984,656 GFF2096 Position (kb) 981 982 983Strain fitness (log2 ratio) -2 -1 0 1at 980.410 kb on - strand, within GFF2093at 980.425 kb on - strand, within GFF2093at 980.446 kb on - strand, within GFF2093at 980.749 kb on - strand, within GFF2093at 980.749 kb on - strand, within GFF2093at 980.805 kb on + strand, within GFF2093at 980.805 kb on + strand, within GFF2093at 981.424 kb on - strand, within GFF2094at 981.424 kb on - strand, within GFF2094at 981.750 kb on + strand, within GFF2094at 983.101 kb on + strandat 983.101 kb on + strandat 983.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1
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980,410 - GFF2093 0.26 +0.1
980,425 - GFF2093 0.28 +0.3
980,446 - GFF2093 0.30 +0.4
980,749 - GFF2093 0.59 +0.1
980,749 - GFF2093 0.59 -0.5
980,805 + GFF2093 0.65 -2.6
980,805 + GFF2093 0.65 -0.8
981,424 - GFF2094 0.17 +0.4
981,424 - GFF2094 0.17 -0.6
981,750 + GFF2094 0.42 -0.9
983,101 + -0.3
983,101 + -0.8
983,102 - -0.7

Or see this region's nucleotide sequence