Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF192 and GFF193 are separated by 41 nucleotides GFF193 and GFF194 are separated by 40 nucleotides GFF194 and GFF195 overlap by 4 nucleotides
GFF192 - Outer membrane protein (porin), at 205,768 to 206,730
GFF192
GFF193 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 206,772 to 207,698
GFF193
GFF194 - FIG003003: hypothetical protein, at 207,739 to 208,551
GFF194
GFF195 - Oxidoreductase, Gfo/Idh/MocA family, at 208,548 to 209,675
GFF195
Position (kb) 206
207
208 Strain fitness (log2 ratio) -1
0
1 at 206.162 kb on - strand, within GFF192 at 206.227 kb on + strand, within GFF192 at 206.228 kb on - strand, within GFF192 at 206.329 kb on + strand, within GFF192 at 206.365 kb on + strand, within GFF192 at 206.426 kb on - strand, within GFF192 at 206.426 kb on - strand, within GFF192 at 206.543 kb on - strand, within GFF192 at 206.552 kb on - strand, within GFF192 at 206.611 kb on + strand, within GFF192 at 206.611 kb on + strand, within GFF192 at 206.612 kb on - strand, within GFF192 at 206.635 kb on + strand at 206.802 kb on + strand at 206.803 kb on - strand at 206.803 kb on - strand at 206.895 kb on + strand, within GFF193 at 206.980 kb on - strand, within GFF193 at 207.318 kb on + strand, within GFF193 at 207.799 kb on + strand at 207.799 kb on + strand at 207.799 kb on + strand at 207.800 kb on - strand at 207.901 kb on + strand, within GFF194 at 207.901 kb on + strand, within GFF194 at 207.901 kb on + strand, within GFF194 at 207.904 kb on + strand, within GFF194 at 207.905 kb on - strand, within GFF194 at 208.486 kb on + strand at 208.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 206,162 - GFF192 0.41 -0.4 206,227 + GFF192 0.48 -1.2 206,228 - GFF192 0.48 -0.6 206,329 + GFF192 0.58 +0.1 206,365 + GFF192 0.62 -0.3 206,426 - GFF192 0.68 +0.8 206,426 - GFF192 0.68 -0.1 206,543 - GFF192 0.80 -0.1 206,552 - GFF192 0.81 +0.3 206,611 + GFF192 0.88 +0.4 206,611 + GFF192 0.88 -0.5 206,612 - GFF192 0.88 -0.3 206,635 + -0.2 206,802 + -0.1 206,803 - -0.4 206,803 - -0.0 206,895 + GFF193 0.13 +0.3 206,980 - GFF193 0.22 -1.3 207,318 + GFF193 0.59 -0.1 207,799 + -0.3 207,799 + +1.5 207,799 + -0.2 207,800 - -0.0 207,901 + GFF194 0.20 -0.2 207,901 + GFF194 0.20 +0.0 207,901 + GFF194 0.20 +0.1 207,904 + GFF194 0.20 +0.2 207,905 - GFF194 0.20 -0.9 208,486 + +0.3 208,487 - +0.1
Or see this region's nucleotide sequence