Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1901 and GFF1902 are separated by 20 nucleotides GFF1902 and GFF1903 are separated by 14 nucleotides
GFF1901 - Outer membrane protein A precursor, at 765,933 to 766,994
GFF1901
GFF1902 - hypothetical protein, at 767,015 to 770,053
GFF1902
GFF1903 - hypothetical protein, at 770,068 to 778,413
GFF1903
Position (kb) 767
768
769
770
771 Strain fitness (log2 ratio) -1
0
1 at 766.448 kb on - strand, within GFF1901 at 766.481 kb on - strand, within GFF1901 at 766.481 kb on - strand, within GFF1901 at 766.768 kb on + strand, within GFF1901 at 766.769 kb on - strand, within GFF1901 at 766.769 kb on - strand, within GFF1901 at 766.769 kb on - strand, within GFF1901 at 767.133 kb on + strand at 767.232 kb on + strand at 767.232 kb on + strand at 767.233 kb on - strand at 767.233 kb on - strand at 767.346 kb on + strand, within GFF1902 at 767.346 kb on + strand, within GFF1902 at 767.346 kb on + strand, within GFF1902 at 767.346 kb on + strand, within GFF1902 at 767.347 kb on - strand, within GFF1902 at 767.347 kb on - strand, within GFF1902 at 767.433 kb on + strand, within GFF1902 at 767.433 kb on + strand, within GFF1902 at 767.434 kb on - strand, within GFF1902 at 767.514 kb on + strand, within GFF1902 at 767.514 kb on + strand, within GFF1902 at 767.515 kb on - strand, within GFF1902 at 767.515 kb on - strand, within GFF1902 at 767.758 kb on - strand, within GFF1902 at 768.081 kb on + strand, within GFF1902 at 768.198 kb on + strand, within GFF1902 at 768.510 kb on + strand, within GFF1902 at 768.511 kb on - strand, within GFF1902 at 768.718 kb on - strand, within GFF1902 at 768.811 kb on - strand, within GFF1902 at 768.837 kb on + strand, within GFF1902 at 768.837 kb on + strand, within GFF1902 at 768.931 kb on - strand, within GFF1902 at 769.263 kb on + strand, within GFF1902 at 769.263 kb on + strand, within GFF1902 at 769.264 kb on - strand, within GFF1902 at 769.323 kb on + strand, within GFF1902 at 769.384 kb on - strand, within GFF1902 at 769.677 kb on + strand, within GFF1902 at 769.678 kb on - strand, within GFF1902 at 770.379 kb on - strand at 770.654 kb on + strand at 770.655 kb on - strand at 770.852 kb on + strand at 770.853 kb on - strand at 770.853 kb on - strand at 770.993 kb on + strand, within GFF1903 at 770.994 kb on - strand, within GFF1903 at 770.994 kb on - strand, within GFF1903 at 770.994 kb on - strand, within GFF1903 at 771.044 kb on + strand, within GFF1903 at 771.045 kb on - strand, within GFF1903
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 766,448 - GFF1901 0.48 +0.9 766,481 - GFF1901 0.52 +0.6 766,481 - GFF1901 0.52 +0.5 766,768 + GFF1901 0.79 -0.6 766,769 - GFF1901 0.79 +0.3 766,769 - GFF1901 0.79 +0.3 766,769 - GFF1901 0.79 -0.3 767,133 + +0.3 767,232 + +0.3 767,232 + +0.9 767,233 - -0.1 767,233 - -0.1 767,346 + GFF1902 0.11 +1.3 767,346 + GFF1902 0.11 -0.9 767,346 + GFF1902 0.11 -0.2 767,346 + GFF1902 0.11 -0.3 767,347 - GFF1902 0.11 -0.2 767,347 - GFF1902 0.11 -0.6 767,433 + GFF1902 0.14 -0.8 767,433 + GFF1902 0.14 +0.4 767,434 - GFF1902 0.14 +0.6 767,514 + GFF1902 0.16 +0.8 767,514 + GFF1902 0.16 +0.7 767,515 - GFF1902 0.16 +1.0 767,515 - GFF1902 0.16 -0.1 767,758 - GFF1902 0.24 +0.4 768,081 + GFF1902 0.35 +0.4 768,198 + GFF1902 0.39 +0.3 768,510 + GFF1902 0.49 -0.4 768,511 - GFF1902 0.49 +0.0 768,718 - GFF1902 0.56 +0.2 768,811 - GFF1902 0.59 +0.2 768,837 + GFF1902 0.60 +1.3 768,837 + GFF1902 0.60 +0.6 768,931 - GFF1902 0.63 +0.4 769,263 + GFF1902 0.74 -0.6 769,263 + GFF1902 0.74 +0.8 769,264 - GFF1902 0.74 +0.2 769,323 + GFF1902 0.76 +0.2 769,384 - GFF1902 0.78 -0.3 769,677 + GFF1902 0.88 +0.6 769,678 - GFF1902 0.88 +0.3 770,379 - +1.4 770,654 + +0.6 770,655 - -0.1 770,852 + +0.7 770,853 - +0.1 770,853 - +0.7 770,993 + GFF1903 0.11 +1.0 770,994 - GFF1903 0.11 +1.1 770,994 - GFF1903 0.11 -0.0 770,994 - GFF1903 0.11 -0.0 771,044 + GFF1903 0.12 +0.2 771,045 - GFF1903 0.12 +0.5
Or see this region's nucleotide sequence