Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF169 and GFF170 are separated by 13 nucleotides GFF170 and GFF171 are separated by 1 nucleotides GFF171 and GFF172 are separated by 57 nucleotides GFF172 and GFF173 are separated by 113 nucleotides GFF173 and GFF174 are separated by 16 nucleotides
GFF169 - Outer membrane protein romA, at 184,395 to 185,516
GFF169
GFF170 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 185,530 to 186,135
GFF170
GFF171 - hypothetical protein, at 186,137 to 186,436
GFF171
GFF172 - Transcriptional regulator, GntR family, at 186,494 to 187,144
GFF172
GFF173 - TRAP-type C4-dicarboxylate transport system, small permease component, at 187,258 to 187,791
GFF173
GFF174 - TRAP-type C4-dicarboxylate transport system, large permease component, at 187,808 to 189,097
GFF174
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1 at 185.605 kb on + strand, within GFF170 at 186.324 kb on + strand, within GFF171 at 186.324 kb on + strand, within GFF171 at 186.327 kb on + strand, within GFF171 at 186.328 kb on - strand, within GFF171 at 186.429 kb on + strand at 186.429 kb on + strand at 186.429 kb on + strand at 186.430 kb on - strand at 186.430 kb on - strand at 186.441 kb on + strand at 186.679 kb on - strand, within GFF172 at 186.679 kb on - strand, within GFF172 at 186.694 kb on - strand, within GFF172 at 187.173 kb on + strand at 187.173 kb on + strand at 187.175 kb on + strand at 187.176 kb on - strand at 187.181 kb on + strand at 187.182 kb on - strand at 187.435 kb on + strand, within GFF173 at 187.435 kb on + strand, within GFF173 at 187.436 kb on - strand, within GFF173 at 187.672 kb on + strand, within GFF173 at 187.673 kb on - strand, within GFF173
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 185,605 + GFF170 0.12 -0.2 186,324 + GFF171 0.62 -0.3 186,324 + GFF171 0.62 -0.4 186,327 + GFF171 0.63 +1.2 186,328 - GFF171 0.64 +0.4 186,429 + +0.4 186,429 + -0.6 186,429 + -0.4 186,430 - +0.2 186,430 - -1.1 186,441 + +0.2 186,679 - GFF172 0.28 -1.8 186,679 - GFF172 0.28 -0.9 186,694 - GFF172 0.31 -1.4 187,173 + +1.1 187,173 + +0.8 187,175 + -0.1 187,176 - -0.6 187,181 + -0.3 187,182 - -0.2 187,435 + GFF173 0.33 -0.5 187,435 + GFF173 0.33 -0.2 187,436 - GFF173 0.33 +0.2 187,672 + GFF173 0.78 -0.7 187,673 - GFF173 0.78 -0.3
Or see this region's nucleotide sequence