Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1637 and GFF1638 are separated by 35 nucleotides GFF1638 and GFF1639 are separated by 29 nucleotides GFF1639 and GFF1640 overlap by 4 nucleotides
GFF1637 - ABC transporter substrate-binding protein, at 493,044 to 493,901
GFF1637
GFF1638 - ABC transporter permease protein, at 493,937 to 494,614
GFF1638
GFF1639 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 494,644 to 495,582
GFF1639
GFF1640 - amino acid ABC transporter, ATP-binding protein, at 495,579 to 496,328
GFF1640
Position (kb) 493
494
495 Strain fitness (log2 ratio) -2
-1
0
1 at 492.938 kb on + strand at 492.938 kb on + strand at 492.938 kb on + strand at 492.939 kb on - strand at 492.983 kb on + strand at 492.983 kb on + strand at 492.983 kb on + strand at 492.983 kb on + strand at 492.984 kb on - strand at 492.984 kb on - strand at 492.984 kb on - strand at 493.224 kb on + strand, within GFF1637 at 493.225 kb on - strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.413 kb on + strand, within GFF1637 at 493.414 kb on - strand, within GFF1637 at 493.414 kb on - strand, within GFF1637 at 493.414 kb on - strand, within GFF1637 at 493.414 kb on - strand, within GFF1637 at 493.426 kb on - strand, within GFF1637 at 493.530 kb on + strand, within GFF1637 at 493.530 kb on + strand, within GFF1637 at 493.530 kb on + strand, within GFF1637 at 493.530 kb on + strand, within GFF1637 at 493.531 kb on - strand, within GFF1637 at 493.674 kb on + strand, within GFF1637 at 493.674 kb on + strand, within GFF1637 at 493.689 kb on + strand, within GFF1637 at 493.689 kb on + strand, within GFF1637 at 493.689 kb on + strand, within GFF1637 at 493.690 kb on - strand, within GFF1637 at 493.690 kb on - strand, within GFF1637 at 493.690 kb on - strand, within GFF1637 at 493.690 kb on - strand, within GFF1637 at 493.821 kb on + strand at 493.842 kb on + strand at 493.919 kb on + strand at 493.970 kb on + strand at 493.971 kb on - strand at 494.117 kb on + strand, within GFF1638 at 494.117 kb on + strand, within GFF1638 at 494.118 kb on - strand, within GFF1638 at 494.168 kb on + strand, within GFF1638 at 494.169 kb on - strand, within GFF1638 at 494.249 kb on + strand, within GFF1638 at 494.249 kb on + strand, within GFF1638 at 494.249 kb on + strand, within GFF1638 at 494.250 kb on - strand, within GFF1638 at 494.250 kb on - strand, within GFF1638 at 494.528 kb on + strand, within GFF1638 at 494.528 kb on + strand, within GFF1638 at 494.529 kb on - strand, within GFF1638 at 494.529 kb on - strand, within GFF1638 at 494.532 kb on - strand, within GFF1638 at 494.532 kb on - strand, within GFF1638 at 494.684 kb on + strand at 495.088 kb on + strand, within GFF1639 at 495.088 kb on + strand, within GFF1639 at 495.088 kb on + strand, within GFF1639 at 495.169 kb on + strand, within GFF1639 at 495.401 kb on - strand, within GFF1639 at 495.401 kb on - strand, within GFF1639 at 495.425 kb on - strand, within GFF1639 at 495.425 kb on - strand, within GFF1639 at 495.425 kb on - strand, within GFF1639 at 495.425 kb on - strand, within GFF1639
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 492,938 + +0.9 492,938 + +1.4 492,938 + +0.7 492,939 - -1.4 492,983 + -1.0 492,983 + -0.5 492,983 + -1.2 492,983 + -0.5 492,984 - -0.4 492,984 - -0.2 492,984 - -0.2 493,224 + GFF1637 0.21 -0.6 493,225 - GFF1637 0.21 -0.2 493,413 + GFF1637 0.43 -0.8 493,413 + GFF1637 0.43 -0.4 493,413 + GFF1637 0.43 -0.2 493,413 + GFF1637 0.43 -0.0 493,413 + GFF1637 0.43 +0.6 493,413 + GFF1637 0.43 -0.1 493,414 - GFF1637 0.43 -0.5 493,414 - GFF1637 0.43 +0.2 493,414 - GFF1637 0.43 +0.8 493,414 - GFF1637 0.43 -0.6 493,426 - GFF1637 0.45 +0.2 493,530 + GFF1637 0.57 +0.2 493,530 + GFF1637 0.57 -0.1 493,530 + GFF1637 0.57 -0.4 493,530 + GFF1637 0.57 -0.4 493,531 - GFF1637 0.57 -1.9 493,674 + GFF1637 0.73 +0.6 493,674 + GFF1637 0.73 +1.1 493,689 + GFF1637 0.75 +0.3 493,689 + GFF1637 0.75 +1.0 493,689 + GFF1637 0.75 -0.2 493,690 - GFF1637 0.75 -2.3 493,690 - GFF1637 0.75 +0.9 493,690 - GFF1637 0.75 -1.1 493,690 - GFF1637 0.75 +0.8 493,821 + +0.3 493,842 + +0.8 493,919 + -0.4 493,970 + -0.0 493,971 - -0.1 494,117 + GFF1638 0.27 +0.1 494,117 + GFF1638 0.27 -0.2 494,118 - GFF1638 0.27 -0.0 494,168 + GFF1638 0.34 +0.6 494,169 - GFF1638 0.34 +0.4 494,249 + GFF1638 0.46 +0.1 494,249 + GFF1638 0.46 -1.0 494,249 + GFF1638 0.46 -0.4 494,250 - GFF1638 0.46 -1.1 494,250 - GFF1638 0.46 -1.3 494,528 + GFF1638 0.87 +0.4 494,528 + GFF1638 0.87 -0.9 494,529 - GFF1638 0.87 +0.2 494,529 - GFF1638 0.87 -0.5 494,532 - GFF1638 0.88 +0.2 494,532 - GFF1638 0.88 -0.1 494,684 + +0.9 495,088 + GFF1639 0.47 -1.2 495,088 + GFF1639 0.47 -0.0 495,088 + GFF1639 0.47 -0.4 495,169 + GFF1639 0.56 -0.4 495,401 - GFF1639 0.81 -0.5 495,401 - GFF1639 0.81 +0.3 495,425 - GFF1639 0.83 +0.9 495,425 - GFF1639 0.83 +0.3 495,425 - GFF1639 0.83 -0.4 495,425 - GFF1639 0.83 -0.0
Or see this region's nucleotide sequence