Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1534 and GFF1535 are separated by 4 nucleotides GFF1535 and GFF1536 are separated by 4 nucleotides GFF1536 and GFF1537 are separated by 31 nucleotides GFF1537 and GFF1538 are separated by 10 nucleotides
GFF1534 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31), at 389,427 to 390,344
GFF1534
GFF1535 - putative exported protein, at 390,349 to 391,329
GFF1535
GFF1536 - InterPro IPR001687 COGs COG0683, at 391,334 to 392,494
GFF1536
GFF1537 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 392,526 to 393,218
GFF1537
GFF1538 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 393,229 to 394,008
GFF1538
Position (kb) 391
392
393 Strain fitness (log2 ratio) -1
0
1 at 390.605 kb on + strand, within GFF1535 at 390.605 kb on + strand, within GFF1535 at 390.765 kb on - strand, within GFF1535 at 390.852 kb on + strand, within GFF1535 at 391.169 kb on + strand, within GFF1535 at 391.425 kb on + strand at 391.426 kb on - strand at 391.656 kb on + strand, within GFF1536 at 391.668 kb on + strand, within GFF1536 at 391.878 kb on + strand, within GFF1536 at 391.878 kb on + strand, within GFF1536 at 391.879 kb on - strand, within GFF1536 at 391.879 kb on - strand, within GFF1536 at 391.879 kb on - strand, within GFF1536 at 391.879 kb on - strand, within GFF1536 at 391.879 kb on - strand, within GFF1536 at 391.921 kb on - strand, within GFF1536 at 391.921 kb on - strand, within GFF1536 at 391.921 kb on - strand, within GFF1536 at 391.954 kb on - strand, within GFF1536 at 392.247 kb on + strand, within GFF1536 at 392.247 kb on + strand, within GFF1536 at 392.248 kb on - strand, within GFF1536 at 392.516 kb on + strand at 392.621 kb on - strand, within GFF1537 at 392.621 kb on - strand, within GFF1537 at 392.621 kb on - strand, within GFF1537 at 392.637 kb on - strand, within GFF1537 at 392.637 kb on - strand, within GFF1537 at 393.225 kb on + strand at 393.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 390,605 + GFF1535 0.26 +1.1 390,605 + GFF1535 0.26 +0.4 390,765 - GFF1535 0.42 +0.3 390,852 + GFF1535 0.51 -1.1 391,169 + GFF1535 0.84 -0.5 391,425 + -1.0 391,426 - -0.2 391,656 + GFF1536 0.28 -0.3 391,668 + GFF1536 0.29 +0.5 391,878 + GFF1536 0.47 -1.0 391,878 + GFF1536 0.47 -0.3 391,879 - GFF1536 0.47 +0.1 391,879 - GFF1536 0.47 -0.5 391,879 - GFF1536 0.47 +0.0 391,879 - GFF1536 0.47 -0.8 391,879 - GFF1536 0.47 -0.5 391,921 - GFF1536 0.51 +0.5 391,921 - GFF1536 0.51 -0.2 391,921 - GFF1536 0.51 +0.0 391,954 - GFF1536 0.53 -1.2 392,247 + GFF1536 0.79 +0.4 392,247 + GFF1536 0.79 +0.3 392,248 - GFF1536 0.79 -0.2 392,516 + -1.3 392,621 - GFF1537 0.14 +0.1 392,621 - GFF1537 0.14 -0.4 392,621 - GFF1537 0.14 +0.3 392,637 - GFF1537 0.16 -0.0 392,637 - GFF1537 0.16 +0.2 393,225 + +0.7 393,261 - +1.0
Or see this region's nucleotide sequence