Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1532 and GFF1533 are separated by 69 nucleotides GFF1533 and GFF1534 are separated by 23 nucleotides GFF1534 and GFF1535 are separated by 4 nucleotides GFF1535 and GFF1536 are separated by 4 nucleotides
GFF1532 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 386,965 to 388,581
GFF1532
GFF1533 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 388,651 to 389,403
GFF1533
GFF1534 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31), at 389,427 to 390,344
GFF1534
GFF1535 - putative exported protein, at 390,349 to 391,329
GFF1535
GFF1536 - InterPro IPR001687 COGs COG0683, at 391,334 to 392,494
GFF1536
Position (kb) 389
390
391 Strain fitness (log2 ratio) -1
0
1 at 388.662 kb on - strand at 388.821 kb on - strand, within GFF1533 at 389.479 kb on + strand at 389.480 kb on - strand at 389.593 kb on + strand, within GFF1534 at 389.594 kb on - strand, within GFF1534 at 389.594 kb on - strand, within GFF1534 at 389.821 kb on + strand, within GFF1534 at 389.822 kb on - strand, within GFF1534 at 390.605 kb on + strand, within GFF1535 at 390.765 kb on - strand, within GFF1535 at 390.852 kb on + strand, within GFF1535 at 391.169 kb on + strand, within GFF1535
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 388,662 - -1.3 388,821 - GFF1533 0.23 -0.4 389,479 + -0.3 389,480 - -0.7 389,593 + GFF1534 0.18 +0.8 389,594 - GFF1534 0.18 +0.1 389,594 - GFF1534 0.18 -0.2 389,821 + GFF1534 0.43 +0.2 389,822 - GFF1534 0.43 +0.0 390,605 + GFF1535 0.26 +0.4 390,765 - GFF1535 0.42 +0.3 390,852 + GFF1535 0.51 -1.1 391,169 + GFF1535 0.84 -0.5
Or see this region's nucleotide sequence