Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1473 and GFF1474 are separated by 240 nucleotides GFF1474 and GFF1475 are separated by 106 nucleotides GFF1475 and GFF1476 are separated by 132 nucleotides
GFF1473 - Probable two-component sensor, near polyamine transporter, at 323,116 to 324,198
GFF1473
GFF1474 - COG0840: Methyl-accepting chemotaxis protein, at 324,439 to 324,867
GFF1474
GFF1475 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 324,974 to 325,291
GFF1475
GFF1476 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 325,424 to 327,556
GFF1476
Position (kb) 324
325
326 Strain fitness (log2 ratio) -1
0
1
2 at 324.068 kb on + strand, within GFF1473 at 324.069 kb on - strand, within GFF1473 at 324.069 kb on - strand, within GFF1473 at 324.089 kb on + strand, within GFF1473 at 324.089 kb on + strand, within GFF1473 at 324.089 kb on + strand, within GFF1473 at 324.089 kb on + strand, within GFF1473 at 324.090 kb on - strand at 324.090 kb on - strand at 324.090 kb on - strand at 324.348 kb on + strand at 324.348 kb on + strand at 324.349 kb on - strand at 324.358 kb on + strand at 324.359 kb on - strand at 324.360 kb on + strand at 324.360 kb on + strand at 324.360 kb on + strand at 324.360 kb on + strand at 324.362 kb on - strand at 324.386 kb on + strand at 324.386 kb on + strand at 324.389 kb on + strand at 324.389 kb on + strand at 324.389 kb on + strand at 324.431 kb on + strand at 324.432 kb on - strand at 324.904 kb on + strand at 324.905 kb on - strand at 324.905 kb on - strand at 324.924 kb on - strand at 325.005 kb on - strand at 325.297 kb on + strand at 325.484 kb on + strand at 325.485 kb on - strand at 325.485 kb on - strand at 325.624 kb on + strand at 325.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 324,068 + GFF1473 0.88 -0.4 324,069 - GFF1473 0.88 +0.7 324,069 - GFF1473 0.88 -0.2 324,089 + GFF1473 0.90 +1.2 324,089 + GFF1473 0.90 +0.5 324,089 + GFF1473 0.90 -0.0 324,089 + GFF1473 0.90 -0.2 324,090 - +0.5 324,090 - -0.5 324,090 - -0.6 324,348 + -1.2 324,348 + -0.3 324,349 - +0.4 324,358 + -0.3 324,359 - +1.0 324,360 + -1.2 324,360 + -0.0 324,360 + +1.8 324,360 + -0.2 324,362 - -0.2 324,386 + -0.6 324,386 + -0.3 324,389 + -0.1 324,389 + -0.5 324,389 + -0.9 324,431 + +0.1 324,432 - -0.1 324,904 + +0.7 324,905 - +0.0 324,905 - -0.0 324,924 - +0.3 325,005 - +0.1 325,297 + +0.3 325,484 + -0.3 325,485 - +0.7 325,485 - +0.2 325,624 + +0.2 325,625 - +1.0
Or see this region's nucleotide sequence