Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1364

Experiment: Ying_Nucleobase14 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1363 and GFF1364 are separated by 70 nucleotidesGFF1364 and GFF1365 are separated by 34 nucleotides GFF1363 - Transaldolase (EC 2.2.1.2), at 218,907 to 219,848 GFF1363 GFF1364 - Phosphogluconate repressor HexR, RpiR family, at 219,919 to 220,767 GFF1364 GFF1365 - Putative glutathione transporter, ATP-binding component, at 220,802 to 221,878 GFF1365 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 219.220 kb on + strand, within GFF1363at 219.220 kb on + strand, within GFF1363at 219.220 kb on + strand, within GFF1363at 219.220 kb on + strand, within GFF1363at 219.221 kb on - strand, within GFF1363at 219.221 kb on - strand, within GFF1363at 219.221 kb on - strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.229 kb on + strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.230 kb on - strand, within GFF1363at 219.313 kb on + strand, within GFF1363at 219.313 kb on + strand, within GFF1363at 219.313 kb on + strand, within GFF1363at 219.313 kb on + strand, within GFF1363at 219.314 kb on - strand, within GFF1363at 219.314 kb on - strand, within GFF1363at 219.314 kb on - strand, within GFF1363at 219.322 kb on + strand, within GFF1363at 219.322 kb on + strand, within GFF1363at 219.322 kb on + strand, within GFF1363at 219.323 kb on - strand, within GFF1363at 219.323 kb on - strand, within GFF1363at 219.464 kb on + strand, within GFF1363at 219.465 kb on - strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.514 kb on + strand, within GFF1363at 219.515 kb on - strand, within GFF1363at 219.515 kb on - strand, within GFF1363at 219.710 kb on - strand, within GFF1363at 219.710 kb on - strand, within GFF1363at 219.710 kb on - strand, within GFF1363at 219.772 kb on + strandat 219.773 kb on - strandat 219.857 kb on + strandat 219.857 kb on + strandat 219.858 kb on - strandat 219.905 kb on + strandat 219.906 kb on - strandat 220.237 kb on + strand, within GFF1364at 220.238 kb on - strand, within GFF1364at 220.238 kb on - strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.324 kb on + strand, within GFF1364at 220.324 kb on + strand, within GFF1364at 220.325 kb on - strand, within GFF1364at 220.325 kb on - strand, within GFF1364at 220.403 kb on - strand, within GFF1364at 220.403 kb on - strand, within GFF1364at 220.616 kb on - strand, within GFF1364at 220.730 kb on - strandat 220.759 kb on + strandat 220.760 kb on - strandat 220.803 kb on + strandat 220.803 kb on + strandat 220.804 kb on - strandat 221.023 kb on + strand, within GFF1365at 221.023 kb on + strand, within GFF1365at 221.023 kb on + strand, within GFF1365at 221.025 kb on + strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.134 kb on + strand, within GFF1365at 221.135 kb on - strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.152 kb on - strand, within GFF1365at 221.152 kb on - strand, within GFF1365at 221.152 kb on - strand, within GFF1365at 221.322 kb on + strand, within GFF1365at 221.323 kb on - strand, within GFF1365at 221.472 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1
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219,220 + GFF1363 0.33 -0.0
219,220 + GFF1363 0.33 -2.8
219,220 + GFF1363 0.33 -1.9
219,220 + GFF1363 0.33 -2.4
219,221 - GFF1363 0.33 -1.5
219,221 - GFF1363 0.33 -0.8
219,221 - GFF1363 0.33 -1.5
219,229 + GFF1363 0.34 -1.5
219,229 + GFF1363 0.34 -1.8
219,229 + GFF1363 0.34 -1.5
219,229 + GFF1363 0.34 -0.8
219,229 + GFF1363 0.34 -2.5
219,230 - GFF1363 0.34 -1.9
219,230 - GFF1363 0.34 -1.8
219,230 - GFF1363 0.34 -1.5
219,230 - GFF1363 0.34 -2.1
219,230 - GFF1363 0.34 -1.3
219,313 + GFF1363 0.43 -1.2
219,313 + GFF1363 0.43 -1.8
219,313 + GFF1363 0.43 +0.5
219,313 + GFF1363 0.43 -2.0
219,314 - GFF1363 0.43 -0.9
219,314 - GFF1363 0.43 -1.6
219,314 - GFF1363 0.43 -0.7
219,322 + GFF1363 0.44 -1.4
219,322 + GFF1363 0.44 -1.3
219,322 + GFF1363 0.44 -1.4
219,323 - GFF1363 0.44 -1.0
219,323 - GFF1363 0.44 -1.3
219,464 + GFF1363 0.59 -1.1
219,465 - GFF1363 0.59 +0.5
219,514 + GFF1363 0.64 -0.1
219,514 + GFF1363 0.64 -1.8
219,514 + GFF1363 0.64 -1.6
219,514 + GFF1363 0.64 +0.1
219,514 + GFF1363 0.64 -1.5
219,514 + GFF1363 0.64 -1.5
219,514 + GFF1363 0.64 -1.2
219,514 + GFF1363 0.64 -1.2
219,515 - GFF1363 0.65 -2.7
219,515 - GFF1363 0.65 -1.7
219,710 - GFF1363 0.85 -1.1
219,710 - GFF1363 0.85 -0.9
219,710 - GFF1363 0.85 -1.9
219,772 + -1.3
219,773 - -1.6
219,857 + -1.8
219,857 + -0.0
219,858 - +0.5
219,905 + -0.0
219,906 - +0.2
220,237 + GFF1364 0.37 +0.5
220,238 - GFF1364 0.38 -0.5
220,238 - GFF1364 0.38 -0.0
220,297 + GFF1364 0.45 -1.0
220,297 + GFF1364 0.45 -0.8
220,297 + GFF1364 0.45 -1.1
220,297 + GFF1364 0.45 -2.4
220,297 + GFF1364 0.45 -0.0
220,298 - GFF1364 0.45 +0.1
220,298 - GFF1364 0.45 -1.6
220,298 - GFF1364 0.45 +0.2
220,298 - GFF1364 0.45 -0.3
220,298 - GFF1364 0.45 +0.1
220,324 + GFF1364 0.48 -0.1
220,324 + GFF1364 0.48 +1.5
220,325 - GFF1364 0.48 -0.6
220,325 - GFF1364 0.48 -1.0
220,403 - GFF1364 0.57 +0.5
220,403 - GFF1364 0.57 -0.3
220,616 - GFF1364 0.82 +1.5
220,730 - +0.7
220,759 + -0.1
220,760 - -0.8
220,803 + -1.3
220,803 + +0.3
220,804 - -0.3
221,023 + GFF1365 0.21 +0.5
221,023 + GFF1365 0.21 +1.0
221,023 + GFF1365 0.21 +0.2
221,025 + GFF1365 0.21 +0.4
221,026 - GFF1365 0.21 -1.3
221,026 - GFF1365 0.21 +0.1
221,026 - GFF1365 0.21 +0.5
221,026 - GFF1365 0.21 -1.0
221,026 - GFF1365 0.21 -1.6
221,088 + GFF1365 0.27 +0.7
221,088 + GFF1365 0.27 -0.3
221,088 + GFF1365 0.27 -0.8
221,088 + GFF1365 0.27 +0.8
221,088 + GFF1365 0.27 -1.2
221,088 + GFF1365 0.27 -0.8
221,088 + GFF1365 0.27 -1.0
221,088 + GFF1365 0.27 +0.0
221,089 - GFF1365 0.27 +0.2
221,089 - GFF1365 0.27 -1.6
221,089 - GFF1365 0.27 -0.2
221,089 - GFF1365 0.27 -0.9
221,089 - GFF1365 0.27 -0.1
221,089 - GFF1365 0.27 +0.4
221,134 + GFF1365 0.31 -0.1
221,135 - GFF1365 0.31 +1.8
221,151 + GFF1365 0.32 -0.9
221,151 + GFF1365 0.32 +0.2
221,151 + GFF1365 0.32 +0.2
221,151 + GFF1365 0.32 -0.1
221,151 + GFF1365 0.32 -0.3
221,151 + GFF1365 0.32 -0.3
221,152 - GFF1365 0.32 +0.5
221,152 - GFF1365 0.32 -0.8
221,152 - GFF1365 0.32 -0.3
221,322 + GFF1365 0.48 -0.0
221,323 - GFF1365 0.48 -1.1
221,472 + GFF1365 0.62 +1.0
221,586 + GFF1365 0.73 +0.4
221,586 + GFF1365 0.73 -0.2
221,586 + GFF1365 0.73 +0.3
221,586 + GFF1365 0.73 +0.8
221,586 + GFF1365 0.73 -1.1
221,586 + GFF1365 0.73 -0.2
221,586 + GFF1365 0.73 +0.6
221,587 - GFF1365 0.73 -0.2
221,587 - GFF1365 0.73 -0.5
221,587 - GFF1365 0.73 -0.5
221,587 - GFF1365 0.73 -0.0
221,587 - GFF1365 0.73 +0.2

Or see this region's nucleotide sequence