Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1168 and GFF1169 overlap by 1 nucleotides GFF1169 and GFF1170 are separated by 101 nucleotides GFF1170 and GFF1171 are separated by 62 nucleotides GFF1171 and GFF1172 are separated by 22 nucleotides
GFF1168 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2), at 26,597 to 27,568
GFF1168
GFF1169 - FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8), at 27,568 to 28,014
GFF1169
GFF1170 - DNA repair protein RadC, at 28,116 to 28,808
GFF1170
GFF1171 - hypothetical protein, at 28,871 to 29,383
GFF1171
GFF1172 - Chloramphenicol-sensitive protein rarD, at 29,406 to 30,197
GFF1172
Position (kb) 28
29 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.680 kb on + strand, within GFF1169 at 27.681 kb on - strand, within GFF1169 at 27.732 kb on - strand, within GFF1169 at 27.732 kb on - strand, within GFF1169 at 27.975 kb on - strand at 28.014 kb on + strand at 28.014 kb on + strand at 28.014 kb on + strand at 28.015 kb on - strand at 28.015 kb on - strand at 28.027 kb on + strand at 28.079 kb on + strand at 28.079 kb on + strand at 28.079 kb on + strand at 28.079 kb on + strand at 28.080 kb on - strand at 28.080 kb on - strand at 28.080 kb on - strand at 28.084 kb on + strand at 28.084 kb on + strand at 28.084 kb on + strand at 28.084 kb on + strand at 28.085 kb on - strand at 28.085 kb on - strand at 28.085 kb on - strand at 28.319 kb on + strand, within GFF1170 at 28.468 kb on - strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.518 kb on + strand, within GFF1170 at 28.519 kb on - strand, within GFF1170 at 28.591 kb on - strand, within GFF1170 at 28.806 kb on + strand at 28.807 kb on - strand at 28.807 kb on - strand at 28.873 kb on - strand at 28.946 kb on + strand, within GFF1171 at 28.947 kb on - strand, within GFF1171 at 29.085 kb on + strand, within GFF1171 at 29.334 kb on + strand at 29.334 kb on + strand at 29.335 kb on - strand at 29.335 kb on - strand at 29.335 kb on - strand at 29.335 kb on - strand at 29.335 kb on - strand at 29.335 kb on - strand at 29.335 kb on - strand at 29.335 kb on - strand at 29.335 kb on - strand at 29.345 kb on + strand at 29.479 kb on + strand at 29.480 kb on - strand at 29.480 kb on - strand at 29.576 kb on + strand, within GFF1172 at 29.576 kb on + strand, within GFF1172 at 29.577 kb on - strand, within GFF1172 at 29.577 kb on - strand, within GFF1172 at 29.577 kb on - strand, within GFF1172 at 29.577 kb on - strand, within GFF1172 at 29.587 kb on + strand, within GFF1172 at 29.587 kb on + strand, within GFF1172 at 29.587 kb on + strand, within GFF1172 at 29.588 kb on - strand, within GFF1172 at 29.603 kb on + strand, within GFF1172 at 29.603 kb on + strand, within GFF1172 at 29.603 kb on + strand, within GFF1172 at 29.638 kb on + strand, within GFF1172 at 29.638 kb on + strand, within GFF1172 at 29.721 kb on + strand, within GFF1172 at 29.721 kb on + strand, within GFF1172 at 29.722 kb on - strand, within GFF1172 at 29.722 kb on - strand, within GFF1172 at 29.722 kb on - strand, within GFF1172 at 29.722 kb on - strand, within GFF1172 at 29.736 kb on + strand, within GFF1172 at 29.736 kb on + strand, within GFF1172 at 29.736 kb on + strand, within GFF1172 at 29.736 kb on + strand, within GFF1172 at 29.737 kb on - strand, within GFF1172 at 29.737 kb on - strand, within GFF1172 at 29.737 kb on - strand, within GFF1172 at 29.741 kb on - strand, within GFF1172 at 29.741 kb on - strand, within GFF1172 at 29.773 kb on - strand, within GFF1172 at 29.773 kb on - strand, within GFF1172
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 27,680 + GFF1169 0.25 -0.6 27,681 - GFF1169 0.25 -1.9 27,732 - GFF1169 0.37 -2.0 27,732 - GFF1169 0.37 +0.7 27,975 - -2.3 28,014 + -1.1 28,014 + -0.3 28,014 + -0.3 28,015 - +1.4 28,015 - -0.5 28,027 + +0.1 28,079 + +0.5 28,079 + -0.3 28,079 + -0.1 28,079 + +0.5 28,080 - +0.9 28,080 - -0.9 28,080 - -0.2 28,084 + +0.3 28,084 + +0.4 28,084 + -0.6 28,084 + +0.9 28,085 - -0.1 28,085 - -1.1 28,085 - -0.1 28,319 + GFF1170 0.29 +0.2 28,468 - GFF1170 0.51 -0.8 28,518 + GFF1170 0.58 +0.3 28,518 + GFF1170 0.58 +0.1 28,518 + GFF1170 0.58 +0.8 28,518 + GFF1170 0.58 +0.0 28,518 + GFF1170 0.58 -1.1 28,519 - GFF1170 0.58 +2.2 28,591 - GFF1170 0.69 +0.4 28,806 + -0.1 28,807 - +0.3 28,807 - +1.2 28,873 - +1.0 28,946 + GFF1171 0.15 -0.7 28,947 - GFF1171 0.15 -0.8 29,085 + GFF1171 0.42 +0.2 29,334 + -2.5 29,334 + +0.0 29,335 - -0.0 29,335 - +0.2 29,335 - -0.7 29,335 - -0.5 29,335 - +0.1 29,335 - -0.1 29,335 - -0.1 29,335 - +0.2 29,335 - -0.0 29,345 + -0.1 29,479 + +0.1 29,480 - +1.0 29,480 - -0.2 29,576 + GFF1172 0.21 -1.4 29,576 + GFF1172 0.21 -0.2 29,577 - GFF1172 0.22 -0.0 29,577 - GFF1172 0.22 +1.0 29,577 - GFF1172 0.22 -0.2 29,577 - GFF1172 0.22 -0.2 29,587 + GFF1172 0.23 -0.8 29,587 + GFF1172 0.23 +0.2 29,587 + GFF1172 0.23 -0.1 29,588 - GFF1172 0.23 -0.2 29,603 + GFF1172 0.25 +0.1 29,603 + GFF1172 0.25 +0.1 29,603 + GFF1172 0.25 +0.3 29,638 + GFF1172 0.29 +0.1 29,638 + GFF1172 0.29 -0.2 29,721 + GFF1172 0.40 -0.3 29,721 + GFF1172 0.40 +0.0 29,722 - GFF1172 0.40 +0.4 29,722 - GFF1172 0.40 +1.5 29,722 - GFF1172 0.40 +0.3 29,722 - GFF1172 0.40 -0.5 29,736 + GFF1172 0.42 -1.7 29,736 + GFF1172 0.42 +1.0 29,736 + GFF1172 0.42 +0.2 29,736 + GFF1172 0.42 +0.1 29,737 - GFF1172 0.42 +0.0 29,737 - GFF1172 0.42 -0.5 29,737 - GFF1172 0.42 -0.3 29,741 - GFF1172 0.42 +0.5 29,741 - GFF1172 0.42 -0.1 29,773 - GFF1172 0.46 +1.1 29,773 - GFF1172 0.46 -0.0
Or see this region's nucleotide sequence