Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1114 and GFF1115 are separated by 612 nucleotides
GFF1114 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 42,335 to 43,378
GFF1114
GFF1115 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 43,991 to 46,078
GFF1115
Position (kb) 43
44
45
46
47 Strain fitness (log2 ratio) -2
-1
0
1 at 43.381 kb on - strand at 43.466 kb on + strand at 43.466 kb on + strand at 43.466 kb on + strand at 43.467 kb on - strand at 43.467 kb on - strand at 43.467 kb on - strand at 43.469 kb on + strand at 43.470 kb on - strand at 43.470 kb on - strand at 43.470 kb on - strand at 43.472 kb on + strand at 43.472 kb on + strand at 43.472 kb on + strand at 43.472 kb on + strand at 43.472 kb on + strand at 43.473 kb on - strand at 43.473 kb on - strand at 43.473 kb on - strand at 43.473 kb on - strand at 43.473 kb on - strand at 43.476 kb on + strand at 43.476 kb on + strand at 43.476 kb on + strand at 43.476 kb on + strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.521 kb on - strand at 43.554 kb on + strand at 43.554 kb on + strand at 43.687 kb on + strand at 43.688 kb on - strand at 43.857 kb on - strand at 43.859 kb on + strand at 43.860 kb on - strand at 43.860 kb on - strand at 43.979 kb on + strand at 43.980 kb on - strand at 43.980 kb on - strand at 44.415 kb on - strand, within GFF1115 at 44.643 kb on + strand, within GFF1115 at 44.644 kb on - strand, within GFF1115 at 44.879 kb on + strand, within GFF1115 at 44.879 kb on + strand, within GFF1115 at 44.960 kb on + strand, within GFF1115 at 44.960 kb on + strand, within GFF1115 at 44.960 kb on + strand, within GFF1115 at 45.921 kb on - strand at 45.921 kb on - strand at 45.959 kb on + strand at 45.959 kb on + strand at 46.135 kb on + strand at 46.182 kb on - strand at 46.324 kb on - strand at 46.341 kb on - strand at 46.374 kb on + strand at 46.374 kb on + strand at 46.375 kb on - strand at 46.397 kb on + strand at 46.397 kb on + strand at 46.415 kb on + strand at 46.498 kb on - strand at 46.651 kb on + strand at 46.652 kb on - strand at 46.652 kb on - strand at 46.718 kb on + strand at 46.719 kb on - strand at 46.739 kb on + strand at 46.931 kb on + strand at 46.932 kb on - strand at 46.932 kb on - strand at 46.970 kb on + strand at 47.004 kb on + strand at 47.004 kb on + strand at 47.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 43,381 - +0.5 43,466 + +0.1 43,466 + -0.3 43,466 + +0.0 43,467 - +0.6 43,467 - -0.1 43,467 - -0.8 43,469 + +0.4 43,470 - -0.0 43,470 - +0.4 43,470 - +0.5 43,472 + -1.8 43,472 + -2.1 43,472 + -0.0 43,472 + +0.6 43,472 + -0.1 43,473 - -0.3 43,473 - +0.3 43,473 - +0.6 43,473 - +0.5 43,473 - -0.5 43,476 + +1.2 43,476 + -0.1 43,476 + -1.6 43,476 + +0.1 43,477 - +0.3 43,477 - -1.8 43,477 - +0.5 43,477 - -0.3 43,477 - -0.1 43,477 - +1.2 43,521 - -0.3 43,554 + -2.2 43,554 + +0.0 43,687 + -0.0 43,688 - +0.5 43,857 - -0.5 43,859 + -0.6 43,860 - +0.2 43,860 - -1.3 43,979 + +0.2 43,980 - +0.0 43,980 - -1.1 44,415 - GFF1115 0.20 -0.1 44,643 + GFF1115 0.31 -0.1 44,644 - GFF1115 0.31 +0.0 44,879 + GFF1115 0.43 -0.9 44,879 + GFF1115 0.43 -0.7 44,960 + GFF1115 0.46 -1.1 44,960 + GFF1115 0.46 -0.5 44,960 + GFF1115 0.46 -1.1 45,921 - +0.9 45,921 - -0.4 45,959 + -1.2 45,959 + +0.4 46,135 + -1.3 46,182 - +0.3 46,324 - +0.4 46,341 - -0.1 46,374 + -0.1 46,374 + -0.3 46,375 - +0.9 46,397 + -0.5 46,397 + -0.4 46,415 + -1.1 46,498 - +0.2 46,651 + -1.6 46,652 - -0.4 46,652 - -0.1 46,718 + +0.2 46,719 - +0.4 46,739 + +0.8 46,931 + +0.7 46,932 - -0.5 46,932 - +0.5 46,970 + -0.3 47,004 + -0.2 47,004 + +0.1 47,068 - -0.3
Or see this region's nucleotide sequence