Strain Fitness in Escherichia fergusonii Becca around EFB2_03386

Experiment: BHIS no phage control with 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with 14 member community
3,535,941	-		EFB2_03384	0.24	+2.7
3,535,941	-		EFB2_03384	0.24	+1.7
3,535,968	+		EFB2_03384	0.31	-0.7
3,535,969	-		EFB2_03384	0.31	-0.3
3,535,969	-		EFB2_03384	0.31	+1.1
3,535,969	-		EFB2_03384	0.31	+1.4
3,535,973	-		EFB2_03384	0.32	+2.7
3,535,986	-		EFB2_03384	0.35	-1.8
3,535,986	-		EFB2_03384	0.35	-0.4
3,535,986	-		EFB2_03384	0.35	-1.8
3,535,999	-		EFB2_03384	0.39	+0.9
3,536,086	-		EFB2_03384	0.60	-0.8
3,536,189	-		EFB2_03384	0.85	+1.9
3,536,256	+				+0.3
3,536,256	+				+1.7
3,536,256	+				-1.0
3,536,256	+				-1.6
3,536,257	-				+1.4
3,536,257	-				-2.6
3,536,257	-				-1.5
3,536,260	-				+0.4
3,536,260	-				+1.0
3,536,260	-				-0.1
3,536,288	+				+0.9
3,536,300	-				+0.1
3,536,360	+				+1.8
3,536,360	+				+1.0
3,536,361	-				+0.2
3,536,362	+				+2.1
3,536,411	+				-0.2
3,536,411	+				+0.4
3,536,411	+				+1.3
3,536,411	+				+1.7
3,536,412	-				+0.7
3,536,412	-				-1.8
3,536,463	+				+0.8
3,536,465	+				-1.7
3,536,465	+				+1.5
3,536,466	-				-0.7
3,536,466	-				+2.1
3,536,496	+				+0.3
3,536,497	-				-0.7
3,536,500	+				-1.4
3,536,501	-				+0.5
3,536,501	-				-0.8
3,536,502	+				+1.3
3,536,502	+				+0.5
3,536,502	+				+0.7
3,536,502	+				+1.2
3,536,502	+				+1.6
3,536,503	-				-1.4
3,536,503	-				-2.3
3,536,518	-				-2.3
3,536,624	+				-0.0
3,536,624	+				-2.6
3,536,624	+				+0.7
3,536,624	+				-0.7
3,536,624	+				-0.7
3,536,624	+				-0.6
3,536,625	-				-0.4
3,536,626	+				-1.4
3,536,626	+				+0.2
3,536,626	+				+1.1
3,536,626	+				+1.0
3,536,626	+				-0.4
3,536,626	+				-0.6
3,536,626	+				+1.5
3,536,627	-				-1.8
3,536,627	-				+1.0
3,536,627	-				-3.2
3,536,627	-				-0.6
3,536,627	-				-0.7
3,536,627	-				-1.9
3,536,627	-				+1.3
3,536,627	-				+2.2
3,536,627	-				-1.3
3,536,627	-				-0.8
3,536,633	+				-1.4
3,536,633	+				+0.7
3,536,641	-		EFB2_03385	0.12	-0.7
3,536,660	+		EFB2_03385	0.30	-0.6
3,536,661	-		EFB2_03385	0.31	-1.1
3,536,666	+		EFB2_03385	0.35	-0.8
3,536,666	+		EFB2_03385	0.35	+0.5
3,536,667	-		EFB2_03385	0.36	+1.0
3,536,671	+		EFB2_03385	0.40	+0.4
3,536,671	+		EFB2_03385	0.40	+1.7
3,536,671	+		EFB2_03385	0.40	-1.3
3,536,671	+		EFB2_03385	0.40	-0.4
3,536,672	-		EFB2_03385	0.41	+0.3
3,536,672	-		EFB2_03385	0.41	-0.2
3,536,672	-		EFB2_03385	0.41	-1.7
3,536,675	+		EFB2_03385	0.44	+0.1
3,536,675	+		EFB2_03385	0.44	-1.4
3,536,675	+		EFB2_03385	0.44	+0.6
3,536,676	-		EFB2_03385	0.44	-0.7
3,536,690	-		EFB2_03385	0.57	+0.2
3,536,714	+		EFB2_03385	0.80	+1.1
3,536,714	+		EFB2_03385	0.80	-0.2
3,536,714	+		EFB2_03385	0.80	-1.7
3,536,715	-		EFB2_03385	0.81	-0.5
3,536,717	+		EFB2_03385	0.82	+1.3
3,536,749	+				+0.7
3,536,769	+				-1.1
3,536,770	-				-0.7
3,536,770	-				-1.1
3,536,782	+				+1.1
3,536,782	+				-2.7
3,536,782	+				+0.5
3,536,782	+				+0.7
3,536,782	+				+1.4
3,536,782	+				+0.1
3,536,782	+				+1.0
3,536,783	-				-1.5
3,536,783	-				-0.5
3,536,783	-				-0.6
3,536,783	-				-1.0
3,536,783	-				-2.7
3,536,791	+				-2.0
3,536,856	-				+1.2
3,536,897	-				-0.8
3,536,897	-				-1.7
3,536,913	-				-2.3
3,536,920	-				-1.7
3,536,938	+				+0.6
3,536,939	-				-2.4
3,536,939	-				+0.1
3,537,027	+				+1.4
3,537,040	-				-2.7
3,537,040	-				-1.8
3,537,105	+		EFB2_03386	0.13	-0.4
3,537,111	+		EFB2_03386	0.13	-0.1
3,537,118	-		EFB2_03386	0.14	+2.1
3,537,118	-		EFB2_03386	0.14	+1.5
3,537,135	+		EFB2_03386	0.15	-2.1
3,537,183	+		EFB2_03386	0.19	+0.2
3,537,183	+		EFB2_03386	0.19	-2.6
3,537,183	+		EFB2_03386	0.19	-2.4
3,537,183	+		EFB2_03386	0.19	+1.4
3,537,184	-		EFB2_03386	0.19	-1.1
3,537,184	-		EFB2_03386	0.19	+0.8
3,537,184	-		EFB2_03386	0.19	+1.9
3,537,184	-		EFB2_03386	0.19	+1.7
3,537,187	+		EFB2_03386	0.19	+1.6
3,537,188	-		EFB2_03386	0.19	+0.2
3,537,188	-		EFB2_03386	0.19	+1.3
3,537,188	-		EFB2_03386	0.19	-1.3
3,537,188	-		EFB2_03386	0.19	-0.4
3,537,188	-		EFB2_03386	0.19	-1.3
3,537,188	-		EFB2_03386	0.19	-0.3
3,537,202	+		EFB2_03386	0.20	-0.8
3,537,202	+		EFB2_03386	0.20	+0.1
3,537,202	+		EFB2_03386	0.20	+1.3
3,537,202	+		EFB2_03386	0.20	+0.0
3,537,202	+		EFB2_03386	0.20	+1.4
3,537,202	+		EFB2_03386	0.20	-2.7
3,537,202	+		EFB2_03386	0.20	-1.8
3,537,202	+		EFB2_03386	0.20	+1.0
3,537,202	+		EFB2_03386	0.20	+1.5
3,537,202	+		EFB2_03386	0.20	+0.6
3,537,202	+		EFB2_03386	0.20	-1.3
3,537,203	-		EFB2_03386	0.20	-3.0
3,537,203	-		EFB2_03386	0.20	-0.3
3,537,203	-		EFB2_03386	0.20	-2.4
3,537,241	+		EFB2_03386	0.23	-1.3
3,537,241	+		EFB2_03386	0.23	-0.3
3,537,241	+		EFB2_03386	0.23	-1.0
3,537,241	+		EFB2_03386	0.23	-2.4
3,537,242	-		EFB2_03386	0.23	-2.0
3,537,242	-		EFB2_03386	0.23	-1.8
3,537,258	+		EFB2_03386	0.25	+1.2
3,537,259	-		EFB2_03386	0.25	+0.2
3,537,259	-		EFB2_03386	0.25	+0.5
3,537,259	-		EFB2_03386	0.25	+1.1
3,537,273	+		EFB2_03386	0.26	-0.5
3,537,273	+		EFB2_03386	0.26	+0.9
3,537,273	+		EFB2_03386	0.26	+0.0
3,537,273	+		EFB2_03386	0.26	+2.6
3,537,273	+		EFB2_03386	0.26	-0.8
3,537,273	+		EFB2_03386	0.26	-0.4
3,537,273	+		EFB2_03386	0.26	+0.9
3,537,274	-		EFB2_03386	0.26	-0.1
3,537,274	-		EFB2_03386	0.26	+0.1
3,537,274	-		EFB2_03386	0.26	+2.6
3,537,274	-		EFB2_03386	0.26	+0.3
3,537,274	-		EFB2_03386	0.26	-1.8
3,537,274	-		EFB2_03386	0.26	-0.5
3,537,274	-		EFB2_03386	0.26	+0.2
3,537,274	-		EFB2_03386	0.26	+0.9
3,537,276	+		EFB2_03386	0.26	-1.8
3,537,276	+		EFB2_03386	0.26	+0.2
3,537,276	+		EFB2_03386	0.26	+4.3
3,537,276	+		EFB2_03386	0.26	+0.6
3,537,276	+		EFB2_03386	0.26	-0.8
3,537,276	+		EFB2_03386	0.26	+1.8
3,537,276	+		EFB2_03386	0.26	+0.2
3,537,276	+		EFB2_03386	0.26	+1.6
3,537,276	+		EFB2_03386	0.26	-0.2
3,537,276	+		EFB2_03386	0.26	+0.4
3,537,276	+		EFB2_03386	0.26	+0.0
3,537,276	+		EFB2_03386	0.26	+1.3
3,537,276	+		EFB2_03386	0.26	-0.4
3,537,276	+		EFB2_03386	0.26	+0.6
3,537,276	+		EFB2_03386	0.26	+1.7
3,537,276	+		EFB2_03386	0.26	-1.9
3,537,276	+		EFB2_03386	0.26	+2.2
3,537,276	+		EFB2_03386	0.26	+2.3
3,537,277	-		EFB2_03386	0.26	+1.8
3,537,277	-		EFB2_03386	0.26	+1.3
3,537,277	-		EFB2_03386	0.26	-1.8
3,537,277	-		EFB2_03386	0.26	-0.1
3,537,277	-		EFB2_03386	0.26	-1.6
3,537,277	-		EFB2_03386	0.26	-2.0
3,537,277	-		EFB2_03386	0.26	+1.5
3,537,277	-		EFB2_03386	0.26	-1.1
3,537,277	-		EFB2_03386	0.26	+1.8
3,537,277	-		EFB2_03386	0.26	+0.0
3,537,277	-		EFB2_03386	0.26	+1.0
3,537,277	-		EFB2_03386	0.26	-1.0
3,537,277	-		EFB2_03386	0.26	-1.7
3,537,277	-		EFB2_03386	0.26	+0.8
3,537,295	-		EFB2_03386	0.28	+0.1
3,537,351	+		EFB2_03386	0.32	-0.4
3,537,352	-		EFB2_03386	0.32	-0.3
3,537,352	-		EFB2_03386	0.32	-0.2
3,537,376	+		EFB2_03386	0.34	+0.4
3,537,376	+		EFB2_03386	0.34	+0.8
3,537,376	+		EFB2_03386	0.34	-0.1
3,537,376	+		EFB2_03386	0.34	-2.0
3,537,377	-		EFB2_03386	0.34	+1.2
3,537,377	-		EFB2_03386	0.34	-1.0
3,537,377	-		EFB2_03386	0.34	-1.0
3,537,396	+		EFB2_03386	0.35	+0.2
3,537,396	+		EFB2_03386	0.35	-0.3
3,537,469	+		EFB2_03386	0.41	-0.5
3,537,469	+		EFB2_03386	0.41	+3.2
3,537,469	+		EFB2_03386	0.41	+1.3
3,537,469	+		EFB2_03386	0.41	+0.4
3,537,475	+		EFB2_03386	0.42	-0.1
3,537,475	+		EFB2_03386	0.42	+1.8
3,537,475	+		EFB2_03386	0.42	+2.1
3,537,476	-		EFB2_03386	0.42	+1.2
3,537,476	-		EFB2_03386	0.42	-0.5
3,537,521	-		EFB2_03386	0.45	-2.5
3,537,540	+		EFB2_03386	0.47	-0.9
3,537,540	+		EFB2_03386	0.47	-0.4
3,537,541	-		EFB2_03386	0.47	+0.7
3,537,541	-		EFB2_03386	0.47	-2.2
3,537,541	-		EFB2_03386	0.47	+3.1
3,537,541	-		EFB2_03386	0.47	-1.6
3,537,569	-		EFB2_03386	0.49	-1.1
3,537,576	+		EFB2_03386	0.49	+2.1
3,537,597	+		EFB2_03386	0.51	-1.6
3,537,597	+		EFB2_03386	0.51	+1.6
3,537,598	-		EFB2_03386	0.51	+0.2
3,537,606	+		EFB2_03386	0.52	-0.7
3,537,606	+		EFB2_03386	0.52	-0.8
3,537,606	+		EFB2_03386	0.52	+0.3
3,537,606	+		EFB2_03386	0.52	-0.8
3,537,607	-		EFB2_03386	0.52	+0.3
3,537,607	-		EFB2_03386	0.52	+1.6
3,537,708	+		EFB2_03386	0.60	+0.5
3,537,708	+		EFB2_03386	0.60	-1.1
3,537,709	-		EFB2_03386	0.60	+3.3
3,537,709	-		EFB2_03386	0.60	-0.1
3,537,709	-		EFB2_03386	0.60	+0.2
3,537,875	-		EFB2_03386	0.73	-0.1
3,537,893	+		EFB2_03386	0.74	-0.7
3,537,893	+		EFB2_03386	0.74	-0.5
3,537,893	+		EFB2_03386	0.74	+0.2
3,537,893	+		EFB2_03386	0.74	+0.7
3,537,894	-		EFB2_03386	0.74	-2.5
3,537,894	-		EFB2_03386	0.74	+2.9
3,537,994	+		EFB2_03386	0.82	+1.0
3,537,995	-		EFB2_03386	0.82	-0.3
3,538,041	+		EFB2_03386	0.86	+0.9
3,538,063	-		EFB2_03386	0.87	+0.3
3,538,074	+		EFB2_03386	0.88	+2.8
3,538,074	+		EFB2_03386	0.88	+3.9
3,538,074	+		EFB2_03386	0.88	+0.5
3,538,074	+		EFB2_03386	0.88	+0.7
3,538,074	+		EFB2_03386	0.88	-1.9
3,538,074	+		EFB2_03386	0.88	-0.8
3,538,074	+		EFB2_03386	0.88	+3.5
3,538,074	+		EFB2_03386	0.88	+1.5
3,538,074	+		EFB2_03386	0.88	-1.4
3,538,075	-		EFB2_03386	0.88	-1.0
3,538,075	-		EFB2_03386	0.88	-1.4
3,538,075	-		EFB2_03386	0.88	-0.8
3,538,075	-		EFB2_03386	0.88	-0.3
3,538,075	-		EFB2_03386	0.88	+1.2
3,538,075	-		EFB2_03386	0.88	-0.7
3,538,075	-		EFB2_03386	0.88	-2.8
3,538,104	+				-1.4
3,538,104	+				-0.6
3,538,104	+				+1.3
3,538,105	-				+0.9
3,538,105	-				+0.6
3,538,105	-				-0.3
3,538,149	+				-2.4
3,538,177	+				-0.6
3,538,177	+				-3.7
3,538,177	+				-0.5
3,538,177	+				-0.3
3,538,177	+				-0.7
3,538,177	+				-1.5
3,538,177	+				-3.1
3,538,177	+				-0.9
3,538,177	+				-0.5
3,538,177	+				+0.8
3,538,178	-				-0.5
3,538,178	-				+0.3
3,538,178	-				+0.6
3,538,178	-				+1.3
3,538,178	-				-1.1
3,538,180	-				-0.3
3,538,180	-				-0.6
3,538,203	+				-1.1
3,538,223	-				+1.9
3,538,237	-				+0.4
3,538,264	+				-2.0
3,538,265	-				-0.6
3,538,265	-				+1.0
3,538,265	-				-0.4
3,538,268	-				-0.6
3,538,268	-				+1.7
3,538,283	+				+0.0
3,538,283	+				+0.2
3,538,283	+				-1.8
3,538,284	-				-0.3
3,538,284	-				+1.5
3,538,284	-				-2.4
3,538,284	-				+0.5
3,538,285	+				-0.2
3,538,285	+				+1.7
3,538,285	+				+1.2
3,538,285	+				+1.6
3,538,286	-				-1.1
3,538,286	-				+3.2
3,538,286	-				+0.8
3,538,329	+				-1.2
3,538,329	+				+1.1
3,538,330	-				-0.7
3,538,336	+				+1.3
3,538,337	-				-0.2
3,538,340	-				+0.8
3,538,340	-				-1.8
3,538,340	-				-1.5
3,538,353	+				+0.9
3,538,387	-				+0.1
3,538,392	+				-1.7
3,538,392	+				+1.0
3,538,392	+				+0.6
3,538,393	-				+2.3
3,538,397	+		EFB2_03387	0.10	+0.3
3,538,397	+		EFB2_03387	0.10	+0.9
3,538,397	+		EFB2_03387	0.10	+0.3
3,538,397	+		EFB2_03387	0.10	-0.8
3,538,398	-		EFB2_03387	0.11	-1.5
3,538,398	-		EFB2_03387	0.11	-0.5
3,538,398	-		EFB2_03387	0.11	+0.0
3,538,398	-		EFB2_03387	0.11	-2.3
3,538,398	-		EFB2_03387	0.11	+0.8
3,538,404	+		EFB2_03387	0.13	+0.8
3,538,437	+		EFB2_03387	0.27	+2.3
3,538,437	+		EFB2_03387	0.27	-2.3
3,538,438	-		EFB2_03387	0.27	-1.3
3,538,471	-		EFB2_03387	0.41	-1.2
3,538,471	-		EFB2_03387	0.41	-2.3
3,538,471	-		EFB2_03387	0.41	+0.3
3,538,483	-		EFB2_03387	0.46	+0.7
3,538,501	+		EFB2_03387	0.53	+1.3
3,538,501	+		EFB2_03387	0.53	+0.5
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