Strain Fitness in Escherichia fergusonii Becca around EFB2_01798

Experiment: BHIS no phage control with 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with 14 member community
1,911,056	-		EFB2_01797	0.18	+2.5
1,911,087	+		EFB2_01797	0.21	+1.5
1,911,088	-		EFB2_01797	0.21	+1.5
1,911,150	-		EFB2_01797	0.26	+0.5
1,911,150	-		EFB2_01797	0.26	-0.4
1,911,150	-		EFB2_01797	0.26	-0.6
1,911,163	+		EFB2_01797	0.27	+0.5
1,911,163	+		EFB2_01797	0.27	-0.4
1,911,164	-		EFB2_01797	0.27	+0.6
1,911,164	-		EFB2_01797	0.27	-1.7
1,911,164	-		EFB2_01797	0.27	-1.2
1,911,203	-		EFB2_01797	0.30	-2.3
1,911,319	-		EFB2_01797	0.40	-0.1
1,911,322	+		EFB2_01797	0.40	-0.5
1,911,322	+		EFB2_01797	0.40	+0.5
1,911,322	+		EFB2_01797	0.40	+1.4
1,911,322	+		EFB2_01797	0.40	-2.5
1,911,322	+		EFB2_01797	0.40	+0.3
1,911,323	-		EFB2_01797	0.40	+1.2
1,911,381	+		EFB2_01797	0.45	+1.1
1,911,381	+		EFB2_01797	0.45	+1.1
1,911,381	+		EFB2_01797	0.45	-0.4
1,911,381	+		EFB2_01797	0.45	-1.9
1,911,382	-		EFB2_01797	0.45	-2.1
1,911,382	-		EFB2_01797	0.45	+0.4
1,911,415	+		EFB2_01797	0.48	+1.2
1,911,415	+		EFB2_01797	0.48	+0.6
1,911,415	+		EFB2_01797	0.48	+0.3
1,911,415	+		EFB2_01797	0.48	-0.3
1,911,451	+		EFB2_01797	0.51	+0.8
1,911,452	-		EFB2_01797	0.51	-0.5
1,911,452	-		EFB2_01797	0.51	-1.0
1,911,458	+		EFB2_01797	0.51	-0.2
1,911,458	+		EFB2_01797	0.51	-1.9
1,911,458	+		EFB2_01797	0.51	+1.3
1,911,459	-		EFB2_01797	0.51	+0.5
1,911,604	+		EFB2_01797	0.63	+1.3
1,911,604	+		EFB2_01797	0.63	-0.1
1,911,604	+		EFB2_01797	0.63	-1.2
1,911,658	+		EFB2_01797	0.68	+1.7
1,911,658	+		EFB2_01797	0.68	+1.2
1,911,658	+		EFB2_01797	0.68	+1.3
1,911,658	+		EFB2_01797	0.68	+0.9
1,911,658	+		EFB2_01797	0.68	+0.4
1,911,658	+		EFB2_01797	0.68	+0.8
1,911,658	+		EFB2_01797	0.68	-0.2
1,911,659	-		EFB2_01797	0.68	-1.0
1,911,659	-		EFB2_01797	0.68	-1.7
1,911,659	-		EFB2_01797	0.68	-0.0
1,911,659	-		EFB2_01797	0.68	-0.3
1,911,659	-		EFB2_01797	0.68	+0.7
1,911,659	-		EFB2_01797	0.68	-2.1
1,911,659	-		EFB2_01797	0.68	-0.6
1,911,659	-		EFB2_01797	0.68	-1.4
1,911,659	-		EFB2_01797	0.68	+0.8
1,911,659	-		EFB2_01797	0.68	+0.8
1,911,667	+		EFB2_01797	0.68	-1.4
1,911,668	-		EFB2_01797	0.68	+0.8
1,911,700	+		EFB2_01797	0.71	-2.4
1,911,766	-		EFB2_01797	0.77	+2.1
1,911,766	-		EFB2_01797	0.77	-1.4
1,911,785	-		EFB2_01797	0.78	+2.7
1,911,788	+		EFB2_01797	0.78	+0.2
1,911,789	-		EFB2_01797	0.78	-0.5
1,911,789	-		EFB2_01797	0.78	-0.2
1,911,789	-		EFB2_01797	0.78	+0.4
1,911,789	-		EFB2_01797	0.78	-1.7
1,911,844	+		EFB2_01797	0.83	-0.6
1,911,845	-		EFB2_01797	0.83	-0.7
1,911,845	-		EFB2_01797	0.83	+1.3
1,911,883	+		EFB2_01797	0.86	-0.2
1,911,883	+		EFB2_01797	0.86	-1.3
1,911,883	+		EFB2_01797	0.86	-1.9
1,911,925	-		EFB2_01797	0.90	-1.9
1,911,925	-		EFB2_01797	0.90	+1.2
1,911,925	-		EFB2_01797	0.90	+1.1
1,911,951	+				-1.0
1,911,952	-				-0.8
1,911,998	+				-0.7
1,911,998	+				-0.5
1,911,998	+				-0.5
1,911,998	+				-1.7
1,911,998	+				-0.8
1,911,999	-				-1.0
1,912,025	+				+2.3
1,912,025	+				-0.5
1,912,025	+				+1.1
1,912,025	+				+0.5
1,912,025	+				-1.4
1,912,025	+				+2.2
1,912,025	+				-0.4
1,912,025	+				-2.3
1,912,025	+				+1.0
1,912,026	-				-0.3
1,912,026	-				+1.5
1,912,026	-				-1.0
1,912,026	-				-1.1
1,912,026	-				-1.2
1,912,026	-				-1.2
1,912,026	-				+1.0
1,912,026	-				-0.2
1,912,026	-				-2.3
1,912,026	-				-0.5
1,912,026	-				-0.3
1,912,026	-				+0.4
1,912,037	+				+2.7
1,912,038	-				+2.5
1,912,049	+				-0.7
1,912,049	+				-0.5
1,912,050	-				-0.0
1,912,050	-				-0.8
1,912,050	-				+1.3
1,912,050	-				+0.3
1,912,050	-				+0.5
1,912,050	-				-1.5
1,912,050	-				-1.1
1,912,050	-				+0.3
1,912,053	+				+0.3
1,912,053	+				-2.5
1,912,053	+				+0.6
1,912,053	+				+0.3
1,912,053	+				+0.4
1,912,053	+				-0.0
1,912,053	+				+1.6
1,912,054	+				+1.5
1,912,054	-				+0.1
1,912,054	-				+0.2
1,912,054	-				-1.0
1,912,054	-				+1.3
1,912,074	+				-0.5
1,912,074	+				+0.1
1,912,074	+				-1.0
1,912,074	+				+0.7
1,912,074	+				+0.1
1,912,074	+				+1.3
1,912,074	+				-0.6
1,912,075	-				-0.3
1,912,075	-				+1.5
1,912,075	-				+0.1
1,912,075	-				+0.3
1,912,075	-				-1.6
1,912,075	-				+0.4
1,912,075	-				+1.4
1,912,075	-				-0.0
1,912,153	+		EFB2_01798	0.10	-0.7
1,912,165	+		EFB2_01798	0.11	-1.5
1,912,166	-		EFB2_01798	0.11	-0.4
1,912,201	+		EFB2_01798	0.14	+0.3
1,912,229	+		EFB2_01798	0.17	-0.5
1,912,229	+		EFB2_01798	0.17	-2.6
1,912,229	+		EFB2_01798	0.17	+0.6
1,912,230	-		EFB2_01798	0.17	+1.8
1,912,230	-		EFB2_01798	0.17	+0.6
1,912,230	-		EFB2_01798	0.17	-0.0
1,912,233	+		EFB2_01798	0.17	-2.1
1,912,233	+		EFB2_01798	0.17	+0.3
1,912,233	+		EFB2_01798	0.17	-0.4
1,912,234	-		EFB2_01798	0.17	-2.1
1,912,234	-		EFB2_01798	0.17	-1.9
1,912,234	-		EFB2_01798	0.17	+0.7
1,912,234	-		EFB2_01798	0.17	+1.1
1,912,234	-		EFB2_01798	0.17	+0.7
1,912,263	-		EFB2_01798	0.19	-0.6
1,912,263	-		EFB2_01798	0.19	-0.2
1,912,263	-		EFB2_01798	0.19	-1.7
1,912,263	-		EFB2_01798	0.19	+0.3
1,912,263	-		EFB2_01798	0.19	+0.6
1,912,263	-		EFB2_01798	0.19	+0.3
1,912,263	-		EFB2_01798	0.19	+0.6
1,912,266	+		EFB2_01798	0.20	+1.1
1,912,266	+		EFB2_01798	0.20	+0.3
1,912,266	+		EFB2_01798	0.20	-1.6
1,912,266	+		EFB2_01798	0.20	+1.4
1,912,266	+		EFB2_01798	0.20	+0.7
1,912,266	+		EFB2_01798	0.20	-3.0
1,912,267	-		EFB2_01798	0.20	-1.9
1,912,267	-		EFB2_01798	0.20	+2.7
1,912,267	-		EFB2_01798	0.20	-0.3
1,912,267	-		EFB2_01798	0.20	+0.3
1,912,267	-		EFB2_01798	0.20	+0.1
1,912,267	-		EFB2_01798	0.20	-0.0
1,912,267	-		EFB2_01798	0.20	+0.1
1,912,293	+		EFB2_01798	0.22	-1.5
1,912,293	+		EFB2_01798	0.22	+1.2
1,912,294	-		EFB2_01798	0.22	+1.0
1,912,295	+		EFB2_01798	0.22	-0.6
1,912,295	+		EFB2_01798	0.22	+1.0
1,912,295	+		EFB2_01798	0.22	-1.9
1,912,295	+		EFB2_01798	0.22	-2.4
1,912,295	+		EFB2_01798	0.22	-0.0
1,912,296	-		EFB2_01798	0.22	+0.2
1,912,296	-		EFB2_01798	0.22	+0.4
1,912,296	-		EFB2_01798	0.22	+1.0
1,912,296	-		EFB2_01798	0.22	-2.1
1,912,326	-		EFB2_01798	0.25	+0.5
1,912,366	+		EFB2_01798	0.28	-1.9
1,912,366	+		EFB2_01798	0.28	+1.0
1,912,366	+		EFB2_01798	0.28	+1.1
1,912,367	-		EFB2_01798	0.28	-1.2
1,912,367	-		EFB2_01798	0.28	-0.9
1,912,367	-		EFB2_01798	0.28	-0.4
1,912,369	+		EFB2_01798	0.28	+1.0
1,912,369	+		EFB2_01798	0.28	+1.1
1,912,369	+		EFB2_01798	0.28	+0.5
1,912,370	-		EFB2_01798	0.28	-0.0
1,912,370	-		EFB2_01798	0.28	-1.5
1,912,370	-		EFB2_01798	0.28	-1.9
1,912,370	-		EFB2_01798	0.28	+0.3
1,912,370	-		EFB2_01798	0.28	-0.5
1,912,370	-		EFB2_01798	0.28	-0.4
1,912,370	-		EFB2_01798	0.28	-1.6
1,912,380	+		EFB2_01798	0.29	-0.4
1,912,380	+		EFB2_01798	0.29	-2.3
1,912,455	-		EFB2_01798	0.35	-0.0
1,912,458	-		EFB2_01798	0.35	-1.8
1,912,458	-		EFB2_01798	0.35	+0.4
1,912,486	-		EFB2_01798	0.38	-1.0
1,912,497	+		EFB2_01798	0.39	-0.0
1,912,497	+		EFB2_01798	0.39	-0.9
1,912,497	+		EFB2_01798	0.39	+2.3
1,912,498	-		EFB2_01798	0.39	-0.9
1,912,498	-		EFB2_01798	0.39	-0.5
1,912,498	-		EFB2_01798	0.39	-2.2
1,912,498	-		EFB2_01798	0.39	-2.1
1,912,780	+		EFB2_01798	0.62	+2.3
1,912,921	+		EFB2_01798	0.73	+0.3
1,912,966	+		EFB2_01798	0.77	-1.1
1,913,061	+		EFB2_01798	0.85	-0.9
1,913,061	+		EFB2_01798	0.85	-0.3
1,913,066	-		EFB2_01798	0.85	-0.3
1,913,066	-		EFB2_01798	0.85	-1.5
1,913,128	+				+2.7
1,913,231	+				-0.9
1,913,241	+				+0.4
1,913,247	+				-0.4
1,913,247	+				+0.6
1,913,262	+				+0.9
1,913,262	+				-1.4
1,913,262	+				+0.7
1,913,262	+				+0.7
1,913,267	+				-0.2
1,913,268	-				-0.9
1,913,401	+		EFB2_01799	0.20	-2.5
1,913,401	+		EFB2_01799	0.20	-0.2
1,913,402	-		EFB2_01799	0.20	-1.1
1,913,421	+		EFB2_01799	0.22	+0.7
1,913,421	+		EFB2_01799	0.22	-0.7
1,913,422	-		EFB2_01799	0.22	-0.3
1,913,422	-		EFB2_01799	0.22	+1.4
1,913,426	-		EFB2_01799	0.23	+0.7
1,913,432	+		EFB2_01799	0.24	+0.5
1,913,433	-		EFB2_01799	0.24	-0.5
1,913,433	-		EFB2_01799	0.24	+0.2
1,913,433	-		EFB2_01799	0.24	-3.4
1,913,433	-		EFB2_01799	0.24	+0.5
1,913,454	+		EFB2_01799	0.27	+0.4
1,913,454	+		EFB2_01799	0.27	+1.7
1,913,460	+		EFB2_01799	0.28	-1.8
1,913,460	+		EFB2_01799	0.28	-0.3
1,913,460	+		EFB2_01799	0.28	-1.1
1,913,461	-		EFB2_01799	0.28	-2.0
1,913,464	+		EFB2_01799	0.28	-1.4
1,913,565	+		EFB2_01799	0.42	-1.6
1,913,565	+		EFB2_01799	0.42	-0.7
1,913,667	+		EFB2_01799	0.55	+0.7
1,913,788	+		EFB2_01799	0.71	+0.9
1,913,788	+		EFB2_01799	0.71	+1.1
1,913,852	+		EFB2_01799	0.80	+0.4
1,913,913	-		EFB2_01799	0.88	+1.1
1,913,919	-		EFB2_01799	0.89	-1.9
1,913,961	+				+0.6
1,913,962	-				+0.6
1,913,962	-				+0.2
1,913,962	-				+0.5
1,913,984	+				-2.5
1,913,984	+				-2.2
1,913,986	+				-0.0
1,913,987	-				+0.6
1,913,987	-				-2.1
1,914,027	-				-2.0
1,914,070	-				+2.2
1,914,107	+		EFB2_01800	0.17	+0.2
1,914,107	+		EFB2_01800	0.17	+0.5
1,914,133	+		EFB2_01800	0.21	+0.4
1,914,162	-		EFB2_01800	0.27	-0.7
1,914,192	+		EFB2_01800	0.32	-0.0
1,914,214	-		EFB2_01800	0.36	+1.8
1,914,231	-		EFB2_01800	0.39	-2.4
1,914,236	+		EFB2_01800	0.40	+1.2