Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01788

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01787 and MPMX26_01788 are separated by 851 nucleotidesMPMX26_01788 and MPMX26_01789 are separated by 92 nucleotidesMPMX26_01789 and MPMX26_01790 are separated by 13 nucleotides MPMX26_01787: MPMX26_01787 - hypothetical protein, at 1,846,622 to 1,846,732 _01787 MPMX26_01788: MPMX26_01788 - hypothetical protein, at 1,847,584 to 1,847,808 _01788 MPMX26_01789: MPMX26_01789 - hypothetical protein, at 1,847,901 to 1,848,668 _01789 MPMX26_01790: MPMX26_01790 - hypothetical protein, at 1,848,682 to 1,849,098 _01790 Position (kb) 1847 1848Strain fitness (log2 ratio) -1 0 1at 1846.709 kb on - strand, within MPMX26_01787at 1847.105 kb on + strandat 1847.105 kb on + strandat 1847.614 kb on + strand, within MPMX26_01788at 1847.634 kb on + strand, within MPMX26_01788at 1847.644 kb on + strand, within MPMX26_01788at 1847.655 kb on + strand, within MPMX26_01788at 1847.789 kb on + strandat 1847.790 kb on + strandat 1847.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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1,846,709 - MPMX26_01787 0.78 +0.6
1,847,105 + +0.2
1,847,105 + +0.2
1,847,614 + MPMX26_01788 0.13 -0.9
1,847,634 + MPMX26_01788 0.22 -0.3
1,847,644 + MPMX26_01788 0.27 -0.5
1,847,655 + MPMX26_01788 0.32 +0.4
1,847,789 + +0.3
1,847,790 + -0.5
1,847,790 + -0.1

Or see this region's nucleotide sequence