Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01018

Experiment: L-tyrosine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_01017 and MPMX26_01018 are separated by 119 nucleotidesMPMX26_01018 and MPMX26_01019 are separated by 108 nucleotidesMPMX26_01019 and MPMX26_01020 are separated by 67 nucleotides MPMX26_01017: MPMX26_01017 - hypothetical protein, at 1,075,925 to 1,076,989 _01017 MPMX26_01018: MPMX26_01018 - hypothetical protein, at 1,077,109 to 1,077,504 _01018 MPMX26_01019: MPMX26_01019 - hypothetical protein, at 1,077,613 to 1,078,245 _01019 MPMX26_01020: MPMX26_01020 - hypothetical protein, at 1,078,313 to 1,079,794 _01020 Position (kb) 1077 1078Strain fitness (log2 ratio) -2 -1 0 1at 1076.283 kb on + strand, within MPMX26_01017at 1076.568 kb on - strand, within MPMX26_01017at 1077.148 kb on - strandat 1077.186 kb on - strand, within MPMX26_01018at 1077.253 kb on - strand, within MPMX26_01018at 1077.253 kb on - strand, within MPMX26_01018at 1077.253 kb on - strand, within MPMX26_01018at 1077.293 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.352 kb on - strand, within MPMX26_01018at 1077.357 kb on - strand, within MPMX26_01018at 1077.357 kb on - strand, within MPMX26_01018at 1077.371 kb on - strand, within MPMX26_01018at 1077.396 kb on - strand, within MPMX26_01018at 1077.425 kb on - strand, within MPMX26_01018at 1077.460 kb on - strand, within MPMX26_01018at 1077.485 kb on - strandat 1077.610 kb on + strandat 1077.612 kb on + strandat 1077.717 kb on + strand, within MPMX26_01019at 1077.767 kb on + strand, within MPMX26_01019at 1077.767 kb on + strand, within MPMX26_01019at 1077.792 kb on + strand, within MPMX26_01019at 1077.877 kb on + strand, within MPMX26_01019at 1077.912 kb on + strand, within MPMX26_01019at 1077.912 kb on + strand, within MPMX26_01019at 1077.921 kb on + strand, within MPMX26_01019at 1077.938 kb on + strand, within MPMX26_01019at 1077.960 kb on + strand, within MPMX26_01019at 1077.960 kb on + strand, within MPMX26_01019at 1077.967 kb on + strand, within MPMX26_01019at 1077.973 kb on + strand, within MPMX26_01019at 1078.013 kb on + strand, within MPMX26_01019at 1078.013 kb on + strand, within MPMX26_01019at 1078.013 kb on + strand, within MPMX26_01019at 1078.077 kb on + strand, within MPMX26_01019at 1078.081 kb on + strand, within MPMX26_01019at 1078.081 kb on + strand, within MPMX26_01019at 1078.117 kb on + strand, within MPMX26_01019at 1078.124 kb on + strand, within MPMX26_01019at 1078.124 kb on + strand, within MPMX26_01019at 1078.124 kb on + strand, within MPMX26_01019at 1078.146 kb on + strand, within MPMX26_01019at 1078.176 kb on + strand, within MPMX26_01019at 1078.181 kb on + strand, within MPMX26_01019at 1078.185 kb on + strandat 1078.185 kb on + strandat 1078.185 kb on + strandat 1078.185 kb on + strandat 1078.325 kb on + strandat 1078.325 kb on - strandat 1078.333 kb on - strandat 1078.333 kb on - strandat 1078.333 kb on - strandat 1078.333 kb on - strandat 1078.333 kb on - strandat 1078.335 kb on + strandat 1078.343 kb on - strandat 1078.343 kb on - strandat 1078.360 kb on - strandat 1078.370 kb on - strandat 1078.370 kb on - strandat 1078.390 kb on - strandat 1078.396 kb on - strandat 1078.396 kb on - strandat 1078.397 kb on - strandat 1078.397 kb on - strandat 1078.417 kb on - strandat 1078.471 kb on - strand, within MPMX26_01020at 1078.493 kb on - strand, within MPMX26_01020at 1078.498 kb on - strand, within MPMX26_01020

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
remove
1,076,283 + MPMX26_01017 0.34 -0.8
1,076,568 - MPMX26_01017 0.60 -0.1
1,077,148 - -1.0
1,077,186 - MPMX26_01018 0.19 -2.1
1,077,253 - MPMX26_01018 0.36 -0.8
1,077,253 - MPMX26_01018 0.36 -0.7
1,077,253 - MPMX26_01018 0.36 -0.9
1,077,293 - MPMX26_01018 0.46 -2.2
1,077,352 - MPMX26_01018 0.61 -1.5
1,077,352 - MPMX26_01018 0.61 -0.3
1,077,352 - MPMX26_01018 0.61 +1.7
1,077,352 - MPMX26_01018 0.61 -1.6
1,077,352 - MPMX26_01018 0.61 -0.8
1,077,352 - MPMX26_01018 0.61 -0.6
1,077,352 - MPMX26_01018 0.61 -1.0
1,077,352 - MPMX26_01018 0.61 -1.2
1,077,352 - MPMX26_01018 0.61 -0.6
1,077,352 - MPMX26_01018 0.61 +0.4
1,077,357 - MPMX26_01018 0.63 -0.5
1,077,357 - MPMX26_01018 0.63 -0.6
1,077,371 - MPMX26_01018 0.66 -1.1
1,077,396 - MPMX26_01018 0.72 -0.4
1,077,425 - MPMX26_01018 0.80 -0.1
1,077,460 - MPMX26_01018 0.89 -1.1
1,077,485 - -0.3
1,077,610 + -0.5
1,077,612 + +0.6
1,077,717 + MPMX26_01019 0.16 -1.1
1,077,767 + MPMX26_01019 0.24 +0.9
1,077,767 + MPMX26_01019 0.24 -0.6
1,077,792 + MPMX26_01019 0.28 +0.5
1,077,877 + MPMX26_01019 0.42 -0.5
1,077,912 + MPMX26_01019 0.47 -0.3
1,077,912 + MPMX26_01019 0.47 -0.8
1,077,921 + MPMX26_01019 0.49 -0.9
1,077,938 + MPMX26_01019 0.51 -0.2
1,077,960 + MPMX26_01019 0.55 -0.5
1,077,960 + MPMX26_01019 0.55 -0.6
1,077,967 + MPMX26_01019 0.56 -0.9
1,077,973 + MPMX26_01019 0.57 -0.1
1,078,013 + MPMX26_01019 0.63 -0.5
1,078,013 + MPMX26_01019 0.63 -0.6
1,078,013 + MPMX26_01019 0.63 -2.4
1,078,077 + MPMX26_01019 0.73 -0.4
1,078,081 + MPMX26_01019 0.74 -1.6
1,078,081 + MPMX26_01019 0.74 +0.1
1,078,117 + MPMX26_01019 0.80 -0.2
1,078,124 + MPMX26_01019 0.81 -0.6
1,078,124 + MPMX26_01019 0.81 -0.0
1,078,124 + MPMX26_01019 0.81 -0.8
1,078,146 + MPMX26_01019 0.84 -0.7
1,078,176 + MPMX26_01019 0.89 -0.3
1,078,181 + MPMX26_01019 0.90 -1.2
1,078,185 + -0.4
1,078,185 + -0.6
1,078,185 + -0.4
1,078,185 + -0.3
1,078,325 + +0.0
1,078,325 - -0.4
1,078,333 - -1.0
1,078,333 - +0.2
1,078,333 - -0.0
1,078,333 - -0.8
1,078,333 - +0.1
1,078,335 + -0.8
1,078,343 - -0.4
1,078,343 - -0.1
1,078,360 - -0.2
1,078,370 - -1.0
1,078,370 - -1.4
1,078,390 - -0.6
1,078,396 - -0.1
1,078,396 - +1.3
1,078,397 - +0.4
1,078,397 - -1.3
1,078,417 - +0.7
1,078,471 - MPMX26_01020 0.11 -0.3
1,078,493 - MPMX26_01020 0.12 +0.3
1,078,498 - MPMX26_01020 0.12 +0.0

Or see this region's nucleotide sequence