Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_19810 and MCAODC_19815 overlap by 34 nucleotides MCAODC_19815 and hchA are separated by 591 nucleotides
MCAODC_19810: MCAODC_19810 - Putative outer membrane protein, at 787,805 to 788,449
_19810
MCAODC_19815: MCAODC_19815 - Outer membrane protein, at 788,416 to 788,991
_19815
MCAODC_19820: hchA - protein deglycase HchA, at 789,583 to 790,434
hchA
Position (kb) 788
789 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 787.762 kb on + strand at 787.931 kb on + strand, within MCAODC_19810 at 787.948 kb on + strand, within MCAODC_19810 at 787.971 kb on - strand, within MCAODC_19810 at 788.042 kb on - strand, within MCAODC_19810 at 788.078 kb on - strand, within MCAODC_19810 at 788.128 kb on + strand, within MCAODC_19810 at 788.138 kb on + strand, within MCAODC_19810 at 788.146 kb on + strand, within MCAODC_19810 at 788.147 kb on - strand, within MCAODC_19810 at 788.151 kb on - strand, within MCAODC_19810 at 788.160 kb on + strand, within MCAODC_19810 at 788.162 kb on + strand, within MCAODC_19810 at 788.162 kb on + strand, within MCAODC_19810 at 788.162 kb on + strand, within MCAODC_19810 at 788.169 kb on + strand, within MCAODC_19810 at 788.209 kb on + strand, within MCAODC_19810 at 788.209 kb on + strand, within MCAODC_19810 at 788.209 kb on + strand, within MCAODC_19810 at 788.213 kb on + strand, within MCAODC_19810 at 788.213 kb on + strand, within MCAODC_19810 at 788.213 kb on + strand, within MCAODC_19810 at 788.214 kb on - strand, within MCAODC_19810 at 788.214 kb on - strand, within MCAODC_19810 at 788.248 kb on + strand, within MCAODC_19810 at 788.248 kb on + strand, within MCAODC_19810 at 788.257 kb on - strand, within MCAODC_19810 at 788.269 kb on + strand, within MCAODC_19810 at 788.326 kb on + strand, within MCAODC_19810 at 788.346 kb on + strand, within MCAODC_19810 at 788.448 kb on - strand at 788.470 kb on - strand at 788.511 kb on + strand, within MCAODC_19815 at 788.511 kb on + strand, within MCAODC_19815 at 788.512 kb on - strand, within MCAODC_19815 at 788.584 kb on - strand, within MCAODC_19815 at 788.609 kb on + strand, within MCAODC_19815 at 788.616 kb on + strand, within MCAODC_19815 at 788.616 kb on + strand, within MCAODC_19815 at 788.616 kb on + strand, within MCAODC_19815 at 788.617 kb on - strand, within MCAODC_19815 at 788.617 kb on - strand, within MCAODC_19815 at 788.617 kb on - strand, within MCAODC_19815 at 788.620 kb on + strand, within MCAODC_19815 at 788.751 kb on + strand, within MCAODC_19815 at 788.751 kb on + strand, within MCAODC_19815 at 788.752 kb on - strand, within MCAODC_19815 at 788.758 kb on - strand, within MCAODC_19815 at 788.766 kb on - strand, within MCAODC_19815 at 788.784 kb on + strand, within MCAODC_19815 at 788.850 kb on + strand, within MCAODC_19815 at 788.851 kb on - strand, within MCAODC_19815 at 788.860 kb on + strand, within MCAODC_19815 at 788.884 kb on + strand, within MCAODC_19815 at 788.884 kb on + strand, within MCAODC_19815 at 788.884 kb on + strand, within MCAODC_19815 at 788.893 kb on + strand, within MCAODC_19815 at 789.016 kb on - strand at 789.155 kb on - strand at 789.316 kb on - strand at 789.367 kb on + strand at 789.458 kb on + strand at 789.459 kb on - strand at 789.544 kb on + strand at 789.560 kb on + strand at 789.670 kb on - strand, within hchA at 789.830 kb on - strand, within hchA at 789.830 kb on - strand, within hchA at 789.898 kb on + strand, within hchA at 789.898 kb on + strand, within hchA at 789.906 kb on + strand, within hchA at 789.952 kb on - strand, within hchA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 787,762 + +1.9 787,931 + MCAODC_19810 0.20 +1.0 787,948 + MCAODC_19810 0.22 +0.1 787,971 - MCAODC_19810 0.26 -0.7 788,042 - MCAODC_19810 0.37 -0.0 788,078 - MCAODC_19810 0.42 -1.8 788,128 + MCAODC_19810 0.50 -0.6 788,138 + MCAODC_19810 0.52 -0.4 788,146 + MCAODC_19810 0.53 +0.5 788,147 - MCAODC_19810 0.53 +0.9 788,151 - MCAODC_19810 0.54 -1.6 788,160 + MCAODC_19810 0.55 -0.4 788,162 + MCAODC_19810 0.55 +0.9 788,162 + MCAODC_19810 0.55 +1.2 788,162 + MCAODC_19810 0.55 +0.2 788,169 + MCAODC_19810 0.56 +0.6 788,209 + MCAODC_19810 0.63 -0.0 788,209 + MCAODC_19810 0.63 -0.8 788,209 + MCAODC_19810 0.63 +0.9 788,213 + MCAODC_19810 0.63 +2.9 788,213 + MCAODC_19810 0.63 +0.8 788,213 + MCAODC_19810 0.63 +0.0 788,214 - MCAODC_19810 0.63 +0.9 788,214 - MCAODC_19810 0.63 -0.4 788,248 + MCAODC_19810 0.69 +0.6 788,248 + MCAODC_19810 0.69 +1.9 788,257 - MCAODC_19810 0.70 +1.3 788,269 + MCAODC_19810 0.72 -0.2 788,326 + MCAODC_19810 0.81 +0.3 788,346 + MCAODC_19810 0.84 +1.9 788,448 - -0.5 788,470 - +0.9 788,511 + MCAODC_19815 0.16 -1.8 788,511 + MCAODC_19815 0.16 +0.2 788,512 - MCAODC_19815 0.17 -0.1 788,584 - MCAODC_19815 0.29 -0.3 788,609 + MCAODC_19815 0.34 +3.2 788,616 + MCAODC_19815 0.35 -0.9 788,616 + MCAODC_19815 0.35 -0.3 788,616 + MCAODC_19815 0.35 +0.9 788,617 - MCAODC_19815 0.35 +0.3 788,617 - MCAODC_19815 0.35 -0.1 788,617 - MCAODC_19815 0.35 -1.3 788,620 + MCAODC_19815 0.35 -0.9 788,751 + MCAODC_19815 0.58 +0.9 788,751 + MCAODC_19815 0.58 -0.0 788,752 - MCAODC_19815 0.58 +1.0 788,758 - MCAODC_19815 0.59 +1.9 788,766 - MCAODC_19815 0.61 -0.1 788,784 + MCAODC_19815 0.64 -0.1 788,850 + MCAODC_19815 0.75 +1.7 788,851 - MCAODC_19815 0.76 +0.9 788,860 + MCAODC_19815 0.77 -0.4 788,884 + MCAODC_19815 0.81 -0.8 788,884 + MCAODC_19815 0.81 +0.4 788,884 + MCAODC_19815 0.81 -0.4 788,893 + MCAODC_19815 0.83 +1.9 789,016 - +1.1 789,155 - +0.1 789,316 - +0.1 789,367 + +0.9 789,458 + +1.9 789,459 - +2.5 789,544 + +0.3 789,560 + -0.0 789,670 - hchA MCAODC_19820 0.10 -2.1 789,830 - hchA MCAODC_19820 0.29 -0.1 789,830 - hchA MCAODC_19820 0.29 +1.7 789,898 + hchA MCAODC_19820 0.37 +0.7 789,898 + hchA MCAODC_19820 0.37 -0.7 789,906 + hchA MCAODC_19820 0.38 -0.7 789,952 - hchA MCAODC_19820 0.43 +1.9
Or see this region's nucleotide sequence