Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrC and yecF are separated by 458 nucleotides yecF and sdiA are separated by 67 nucleotides
MCAODC_19570: uvrC - excinuclease ABC subunit UvrC, at 746,244 to 746,900
uvrC
MCAODC_19575: yecF - DUF2594 domain-containing protein, at 747,359 to 747,583
yecF
MCAODC_19580: sdiA - transcriptional regulator SdiA, at 747,651 to 748,373
sdiA
Position (kb) 747
748 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 746.430 kb on - strand, within uvrC at 746.430 kb on - strand, within uvrC at 746.531 kb on - strand, within uvrC at 746.531 kb on - strand, within uvrC at 746.531 kb on - strand, within uvrC at 746.531 kb on - strand, within uvrC at 746.746 kb on - strand, within uvrC at 746.820 kb on + strand, within uvrC at 746.821 kb on - strand, within uvrC at 746.821 kb on - strand, within uvrC at 746.830 kb on - strand, within uvrC at 746.830 kb on - strand, within uvrC at 746.830 kb on - strand, within uvrC at 746.830 kb on - strand, within uvrC at 746.832 kb on - strand, within uvrC at 746.887 kb on - strand at 746.887 kb on - strand at 746.887 kb on - strand at 746.907 kb on - strand at 746.931 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.950 kb on + strand at 746.951 kb on - strand at 746.951 kb on - strand at 746.951 kb on - strand at 747.041 kb on + strand at 747.042 kb on - strand at 747.042 kb on - strand at 747.121 kb on - strand at 747.156 kb on + strand at 747.162 kb on + strand at 747.163 kb on - strand at 747.178 kb on + strand at 747.207 kb on - strand at 747.220 kb on + strand at 747.220 kb on + strand at 747.221 kb on - strand at 747.221 kb on - strand at 747.222 kb on + strand at 747.223 kb on - strand at 747.291 kb on + strand at 747.296 kb on + strand at 747.296 kb on + strand at 747.296 kb on + strand at 747.296 kb on + strand at 747.357 kb on - strand at 747.364 kb on + strand at 747.586 kb on + strand at 747.600 kb on - strand at 747.696 kb on - strand at 747.859 kb on - strand, within sdiA at 748.029 kb on + strand, within sdiA at 748.096 kb on - strand, within sdiA at 748.096 kb on - strand, within sdiA at 748.163 kb on - strand, within sdiA at 748.166 kb on - strand, within sdiA at 748.166 kb on - strand, within sdiA at 748.187 kb on - strand, within sdiA at 748.187 kb on - strand, within sdiA at 748.195 kb on + strand, within sdiA at 748.195 kb on + strand, within sdiA at 748.196 kb on - strand, within sdiA at 748.196 kb on - strand, within sdiA at 748.196 kb on - strand, within sdiA at 748.208 kb on + strand, within sdiA at 748.209 kb on - strand, within sdiA at 748.243 kb on - strand, within sdiA at 748.243 kb on - strand, within sdiA at 748.295 kb on - strand, within sdiA at 748.295 kb on - strand, within sdiA at 748.295 kb on - strand, within sdiA at 748.377 kb on - strand at 748.377 kb on - strand at 748.377 kb on - strand at 748.409 kb on + strand at 748.410 kb on - strand at 748.410 kb on - strand at 748.428 kb on - strand at 748.435 kb on - strand at 748.452 kb on - strand at 748.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 746,430 - uvrC MCAODC_19570 0.28 -1.0 746,430 - uvrC MCAODC_19570 0.28 -2.1 746,531 - uvrC MCAODC_19570 0.44 +2.1 746,531 - uvrC MCAODC_19570 0.44 -0.5 746,531 - uvrC MCAODC_19570 0.44 +0.7 746,531 - uvrC MCAODC_19570 0.44 +1.3 746,746 - uvrC MCAODC_19570 0.76 -0.2 746,820 + uvrC MCAODC_19570 0.88 -0.5 746,821 - uvrC MCAODC_19570 0.88 -1.2 746,821 - uvrC MCAODC_19570 0.88 +0.7 746,830 - uvrC MCAODC_19570 0.89 +1.6 746,830 - uvrC MCAODC_19570 0.89 -0.1 746,830 - uvrC MCAODC_19570 0.89 -0.2 746,830 - uvrC MCAODC_19570 0.89 -0.7 746,832 - uvrC MCAODC_19570 0.89 +0.6 746,887 - -0.6 746,887 - -0.1 746,887 - +0.5 746,907 - -2.4 746,931 - +0.5 746,937 - -0.4 746,937 - -1.0 746,950 + -0.7 746,951 - +1.1 746,951 - +2.2 746,951 - +0.8 747,041 + +0.3 747,042 - +1.1 747,042 - +3.2 747,121 - -0.6 747,156 + +0.1 747,162 + -1.2 747,163 - -1.0 747,178 + -0.7 747,207 - +1.8 747,220 + +0.7 747,220 + -0.0 747,221 - -0.2 747,221 - -2.0 747,222 + +1.3 747,223 - -0.2 747,291 + -1.5 747,296 + +0.3 747,296 + +0.8 747,296 + -2.2 747,296 + -0.5 747,357 - +1.8 747,364 + +0.1 747,586 + +0.5 747,600 - -0.5 747,696 - +0.6 747,859 - sdiA MCAODC_19580 0.29 +0.5 748,029 + sdiA MCAODC_19580 0.52 -0.5 748,096 - sdiA MCAODC_19580 0.62 +0.7 748,096 - sdiA MCAODC_19580 0.62 +3.1 748,163 - sdiA MCAODC_19580 0.71 +1.1 748,166 - sdiA MCAODC_19580 0.71 -1.2 748,166 - sdiA MCAODC_19580 0.71 +0.3 748,187 - sdiA MCAODC_19580 0.74 -1.3 748,187 - sdiA MCAODC_19580 0.74 +2.8 748,195 + sdiA MCAODC_19580 0.75 +0.7 748,195 + sdiA MCAODC_19580 0.75 -0.7 748,196 - sdiA MCAODC_19580 0.75 +1.2 748,196 - sdiA MCAODC_19580 0.75 +1.8 748,196 - sdiA MCAODC_19580 0.75 -0.9 748,208 + sdiA MCAODC_19580 0.77 +0.7 748,209 - sdiA MCAODC_19580 0.77 +0.4 748,243 - sdiA MCAODC_19580 0.82 +0.0 748,243 - sdiA MCAODC_19580 0.82 +0.6 748,295 - sdiA MCAODC_19580 0.89 +1.2 748,295 - sdiA MCAODC_19580 0.89 +0.7 748,295 - sdiA MCAODC_19580 0.89 +0.4 748,377 - -0.1 748,377 - +0.4 748,377 - +0.7 748,409 + +0.4 748,410 - -0.4 748,410 - +0.4 748,428 - -0.2 748,435 - -0.1 748,452 - -0.7 748,509 - -0.5
Or see this region's nucleotide sequence