Strain Fitness in Escherichia coli ECRC101 around MCAODC_18535

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjZ and ynjA overlap by 1 nucleotidesynjA and ynjB are separated by 9 nucleotidesynjB and ynjC overlap by 28 nucleotides MCAODC_18525: ydjZ - TVP38/TMEM64 family inner membrane protein YdjZ, at 563,588 to 564,295 ydjZ MCAODC_18530: ynjA - Uncharacterized protein YnjA, at 564,295 to 564,843 ynjA MCAODC_18535: ynjB - ABC transporter substrate-binding protein, at 564,853 to 566,019 ynjB MCAODC_18540: ynjC - Inner membrane ABC transporter permease protein YnjC, at 565,992 to 567,527 ynjC Position (kb) 564 565 566 567Strain fitness (log2 ratio) -2 -1 0 1 2at 563.995 kb on + strand, within ydjZat 564.080 kb on + strand, within ydjZat 564.081 kb on - strand, within ydjZat 564.155 kb on - strand, within ydjZat 564.161 kb on + strand, within ydjZat 564.162 kb on - strand, within ydjZat 564.364 kb on + strand, within ynjAat 564.377 kb on + strand, within ynjAat 564.377 kb on + strand, within ynjAat 564.479 kb on + strand, within ynjAat 564.822 kb on + strandat 564.841 kb on + strandat 564.997 kb on + strand, within ynjBat 565.039 kb on - strand, within ynjBat 565.040 kb on + strand, within ynjBat 565.041 kb on - strand, within ynjBat 565.172 kb on + strand, within ynjBat 565.228 kb on + strand, within ynjBat 565.401 kb on + strand, within ynjBat 565.484 kb on + strand, within ynjBat 565.485 kb on - strand, within ynjBat 565.540 kb on + strand, within ynjBat 565.561 kb on + strand, within ynjBat 565.561 kb on + strand, within ynjBat 565.561 kb on + strand, within ynjBat 565.562 kb on - strand, within ynjBat 565.654 kb on - strand, within ynjBat 565.709 kb on - strand, within ynjBat 565.974 kb on - strandat 566.052 kb on + strandat 566.252 kb on + strand, within ynjCat 566.344 kb on - strand, within ynjCat 566.349 kb on + strand, within ynjCat 566.452 kb on + strand, within ynjCat 566.473 kb on + strand, within ynjCat 566.633 kb on + strand, within ynjCat 566.654 kb on - strand, within ynjCat 566.767 kb on + strand, within ynjCat 566.767 kb on + strand, within ynjCat 566.768 kb on - strand, within ynjCat 566.774 kb on + strand, within ynjCat 566.790 kb on - strand, within ynjCat 566.790 kb on - strand, within ynjCat 566.814 kb on - strand, within ynjCat 566.990 kb on - strand, within ynjC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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563,995 + ydjZ MCAODC_18525 0.57 +0.3
564,080 + ydjZ MCAODC_18525 0.69 -0.5
564,081 - ydjZ MCAODC_18525 0.70 -0.1
564,155 - ydjZ MCAODC_18525 0.80 +1.9
564,161 + ydjZ MCAODC_18525 0.81 +0.3
564,162 - ydjZ MCAODC_18525 0.81 +0.9
564,364 + ynjA MCAODC_18530 0.13 +0.9
564,377 + ynjA MCAODC_18530 0.15 +0.9
564,377 + ynjA MCAODC_18530 0.15 +0.9
564,479 + ynjA MCAODC_18530 0.34 -0.4
564,822 + +1.0
564,841 + +1.5
564,997 + ynjB MCAODC_18535 0.12 +1.9
565,039 - ynjB MCAODC_18535 0.16 +1.9
565,040 + ynjB MCAODC_18535 0.16 +0.4
565,041 - ynjB MCAODC_18535 0.16 -0.0
565,172 + ynjB MCAODC_18535 0.27 +0.8
565,228 + ynjB MCAODC_18535 0.32 +1.5
565,401 + ynjB MCAODC_18535 0.47 -0.7
565,484 + ynjB MCAODC_18535 0.54 -1.6
565,485 - ynjB MCAODC_18535 0.54 +1.1
565,540 + ynjB MCAODC_18535 0.59 +0.9
565,561 + ynjB MCAODC_18535 0.61 +0.3
565,561 + ynjB MCAODC_18535 0.61 +0.3
565,561 + ynjB MCAODC_18535 0.61 -1.4
565,562 - ynjB MCAODC_18535 0.61 +1.9
565,654 - ynjB MCAODC_18535 0.69 -0.1
565,709 - ynjB MCAODC_18535 0.73 -0.1
565,974 - -0.4
566,052 + +2.4
566,252 + ynjC MCAODC_18540 0.17 +1.1
566,344 - ynjC MCAODC_18540 0.23 +0.9
566,349 + ynjC MCAODC_18540 0.23 +0.3
566,452 + ynjC MCAODC_18540 0.30 -0.7
566,473 + ynjC MCAODC_18540 0.31 +1.9
566,633 + ynjC MCAODC_18540 0.42 -2.7
566,654 - ynjC MCAODC_18540 0.43 +0.9
566,767 + ynjC MCAODC_18540 0.50 +0.6
566,767 + ynjC MCAODC_18540 0.50 +0.9
566,768 - ynjC MCAODC_18540 0.51 -1.1
566,774 + ynjC MCAODC_18540 0.51 +0.6
566,790 - ynjC MCAODC_18540 0.52 -2.5
566,790 - ynjC MCAODC_18540 0.52 +0.9
566,814 - ynjC MCAODC_18540 0.54 -0.0
566,990 - ynjC MCAODC_18540 0.65 -1.1

Or see this region's nucleotide sequence