Strain Fitness in Escherichia coli ECRC101 around MCAODC_18380

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpfkB and ydiZ are separated by 100 nucleotidesydiZ and yniA are separated by 105 nucleotides MCAODC_18375: pfkB - 6-phosphofructokinase II, at 535,352 to 536,281 pfkB MCAODC_18380: ydiZ - Uncharacterized protein YdiZ, at 536,382 to 536,672 ydiZ MCAODC_18385: yniA - putative ketoamine kinase YniA, at 536,778 to 537,638 yniA Position (kb) 536 537Strain fitness (log2 ratio) -2 -1 0 1 2 3at 535.599 kb on + strand, within pfkBat 535.599 kb on + strand, within pfkBat 535.635 kb on + strand, within pfkBat 535.635 kb on + strand, within pfkBat 535.635 kb on + strand, within pfkBat 535.635 kb on + strand, within pfkBat 535.635 kb on + strand, within pfkBat 535.636 kb on - strand, within pfkBat 535.672 kb on + strand, within pfkBat 535.758 kb on + strand, within pfkBat 535.758 kb on + strand, within pfkBat 535.866 kb on + strand, within pfkBat 536.120 kb on - strand, within pfkBat 536.120 kb on - strand, within pfkBat 536.345 kb on + strandat 536.346 kb on - strandat 536.381 kb on + strandat 536.381 kb on + strandat 536.406 kb on + strandat 536.435 kb on + strand, within ydiZat 536.466 kb on + strand, within ydiZat 536.516 kb on + strand, within ydiZat 536.534 kb on + strand, within ydiZat 536.534 kb on + strand, within ydiZat 536.549 kb on + strand, within ydiZat 536.549 kb on + strand, within ydiZat 536.549 kb on + strand, within ydiZat 536.746 kb on + strandat 536.746 kb on + strandat 536.815 kb on + strandat 536.981 kb on + strand, within yniAat 537.116 kb on - strand, within yniAat 537.359 kb on - strand, within yniAat 537.461 kb on + strand, within yniAat 537.462 kb on - strand, within yniAat 537.484 kb on - strand, within yniAat 537.553 kb on - strandat 537.577 kb on + strandat 537.578 kb on - strandat 537.625 kb on + strandat 537.629 kb on - strandat 537.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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535,599 + pfkB MCAODC_18375 0.27 -1.0
535,599 + pfkB MCAODC_18375 0.27 +2.6
535,635 + pfkB MCAODC_18375 0.30 +1.3
535,635 + pfkB MCAODC_18375 0.30 -0.1
535,635 + pfkB MCAODC_18375 0.30 -1.6
535,635 + pfkB MCAODC_18375 0.30 +0.0
535,635 + pfkB MCAODC_18375 0.30 +0.4
535,636 - pfkB MCAODC_18375 0.31 -1.1
535,672 + pfkB MCAODC_18375 0.34 -0.5
535,758 + pfkB MCAODC_18375 0.44 +2.9
535,758 + pfkB MCAODC_18375 0.44 +2.9
535,866 + pfkB MCAODC_18375 0.55 -0.5
536,120 - pfkB MCAODC_18375 0.83 +0.6
536,120 - pfkB MCAODC_18375 0.83 +0.5
536,345 + -0.6
536,346 - +1.0
536,381 + +0.1
536,381 + -0.1
536,406 + +0.9
536,435 + ydiZ MCAODC_18380 0.18 -0.5
536,466 + ydiZ MCAODC_18380 0.29 +0.9
536,516 + ydiZ MCAODC_18380 0.46 -2.1
536,534 + ydiZ MCAODC_18380 0.52 -2.1
536,534 + ydiZ MCAODC_18380 0.52 +0.2
536,549 + ydiZ MCAODC_18380 0.57 -1.0
536,549 + ydiZ MCAODC_18380 0.57 -0.7
536,549 + ydiZ MCAODC_18380 0.57 -1.0
536,746 + -0.7
536,746 + +0.0
536,815 + -0.3
536,981 + yniA MCAODC_18385 0.24 -1.1
537,116 - yniA MCAODC_18385 0.39 +0.0
537,359 - yniA MCAODC_18385 0.67 +0.4
537,461 + yniA MCAODC_18385 0.79 -1.0
537,462 - yniA MCAODC_18385 0.79 +0.3
537,484 - yniA MCAODC_18385 0.82 +0.9
537,553 - -0.5
537,577 + -1.1
537,578 - +0.9
537,625 + +2.1
537,629 - +0.7
537,629 - +0.6

Or see this region's nucleotide sequence