Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_18235 and ydiQ are separated by 36 nucleotides ydiQ and ydiR are separated by 19 nucleotides ydiR and ydiS are separated by 55 nucleotides
MCAODC_18235: MCAODC_18235 - hypothetical protein, at 508,387 to 508,563
_18235
MCAODC_18240: ydiQ - electron transfer flavoprotein, at 508,600 to 509,364
ydiQ
MCAODC_18245: ydiR - electron transfer flavoprotein subunit alpha, at 509,384 to 510,322
ydiR
MCAODC_18250: ydiS - putative electron transfer flavoprotein-quinone oxidoreductase YdiS, at 510,378 to 511,667
ydiS
Position (kb) 509
510
511 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 508.412 kb on - strand, within MCAODC_18235 at 508.428 kb on + strand, within MCAODC_18235 at 508.428 kb on + strand, within MCAODC_18235 at 508.663 kb on + strand at 508.664 kb on - strand at 508.843 kb on + strand, within ydiQ at 508.843 kb on + strand, within ydiQ at 508.843 kb on + strand, within ydiQ at 508.843 kb on + strand, within ydiQ at 508.844 kb on - strand, within ydiQ at 508.844 kb on - strand, within ydiQ at 508.844 kb on - strand, within ydiQ at 508.846 kb on - strand, within ydiQ at 508.967 kb on - strand, within ydiQ at 509.140 kb on - strand, within ydiQ at 509.286 kb on + strand, within ydiQ at 509.287 kb on - strand, within ydiQ at 509.414 kb on - strand at 509.522 kb on + strand, within ydiR at 509.677 kb on - strand, within ydiR at 509.854 kb on + strand, within ydiR at 509.855 kb on - strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.888 kb on + strand, within ydiR at 509.889 kb on - strand, within ydiR at 510.107 kb on + strand, within ydiR at 510.181 kb on + strand, within ydiR at 510.181 kb on + strand, within ydiR at 510.181 kb on + strand, within ydiR at 510.181 kb on + strand, within ydiR at 510.182 kb on - strand, within ydiR at 510.251 kb on + strand at 510.252 kb on - strand at 510.277 kb on + strand at 510.278 kb on - strand at 510.372 kb on + strand at 510.372 kb on + strand at 510.373 kb on - strand at 510.479 kb on - strand at 510.581 kb on - strand, within ydiS at 510.581 kb on - strand, within ydiS at 510.684 kb on + strand, within ydiS at 510.685 kb on - strand, within ydiS at 510.685 kb on - strand, within ydiS at 510.685 kb on - strand, within ydiS at 510.686 kb on + strand, within ydiS at 510.687 kb on - strand, within ydiS at 510.691 kb on + strand, within ydiS at 510.824 kb on + strand, within ydiS at 510.864 kb on - strand, within ydiS at 510.932 kb on + strand, within ydiS at 510.980 kb on + strand, within ydiS at 511.058 kb on + strand, within ydiS at 511.214 kb on + strand, within ydiS at 511.313 kb on + strand, within ydiS
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 508,412 - MCAODC_18235 0.14 +1.2 508,428 + MCAODC_18235 0.23 +0.9 508,428 + MCAODC_18235 0.23 -0.1 508,663 + -0.1 508,664 - +1.9 508,843 + ydiQ MCAODC_18240 0.32 +2.1 508,843 + ydiQ MCAODC_18240 0.32 -0.5 508,843 + ydiQ MCAODC_18240 0.32 -0.1 508,843 + ydiQ MCAODC_18240 0.32 +1.6 508,844 - ydiQ MCAODC_18240 0.32 -0.5 508,844 - ydiQ MCAODC_18240 0.32 -0.5 508,844 - ydiQ MCAODC_18240 0.32 +0.3 508,846 - ydiQ MCAODC_18240 0.32 +2.4 508,967 - ydiQ MCAODC_18240 0.48 +1.0 509,140 - ydiQ MCAODC_18240 0.71 -0.2 509,286 + ydiQ MCAODC_18240 0.90 -0.7 509,287 - ydiQ MCAODC_18240 0.90 +0.3 509,414 - +0.5 509,522 + ydiR MCAODC_18245 0.15 +1.1 509,677 - ydiR MCAODC_18245 0.31 +0.3 509,854 + ydiR MCAODC_18245 0.50 -0.3 509,855 - ydiR MCAODC_18245 0.50 +0.9 509,888 + ydiR MCAODC_18245 0.54 -0.7 509,888 + ydiR MCAODC_18245 0.54 +2.4 509,888 + ydiR MCAODC_18245 0.54 +1.9 509,888 + ydiR MCAODC_18245 0.54 -0.1 509,888 + ydiR MCAODC_18245 0.54 +0.9 509,889 - ydiR MCAODC_18245 0.54 +1.9 510,107 + ydiR MCAODC_18245 0.77 +0.3 510,181 + ydiR MCAODC_18245 0.85 -1.0 510,181 + ydiR MCAODC_18245 0.85 -0.7 510,181 + ydiR MCAODC_18245 0.85 -0.5 510,181 + ydiR MCAODC_18245 0.85 +0.8 510,182 - ydiR MCAODC_18245 0.85 -0.4 510,251 + -2.1 510,252 - +0.6 510,277 + +0.5 510,278 - -1.5 510,372 + +0.3 510,372 + -0.0 510,373 - +0.3 510,479 - +0.3 510,581 - ydiS MCAODC_18250 0.16 +3.1 510,581 - ydiS MCAODC_18250 0.16 +2.3 510,684 + ydiS MCAODC_18250 0.24 -1.0 510,685 - ydiS MCAODC_18250 0.24 -0.2 510,685 - ydiS MCAODC_18250 0.24 +0.3 510,685 - ydiS MCAODC_18250 0.24 -0.0 510,686 + ydiS MCAODC_18250 0.24 -0.2 510,687 - ydiS MCAODC_18250 0.24 +0.3 510,691 + ydiS MCAODC_18250 0.24 +0.3 510,824 + ydiS MCAODC_18250 0.35 -1.6 510,864 - ydiS MCAODC_18250 0.38 +1.8 510,932 + ydiS MCAODC_18250 0.43 +0.3 510,980 + ydiS MCAODC_18250 0.47 +0.3 511,058 + ydiS MCAODC_18250 0.53 -0.7 511,214 + ydiS MCAODC_18250 0.65 +1.8 511,313 + ydiS MCAODC_18250 0.72 +2.8
Or see this region's nucleotide sequence