Strain Fitness in Escherichia coli ECRC101 around MCAODC_16955

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnleG6-2 and nleG2-3 are separated by 72 nucleotidesnleG2-3 and MCAODC_16955 are separated by 113 nucleotidesMCAODC_16955 and MCAODC_16960 are separated by 1 nucleotides MCAODC_16945: nleG6-2 - DUF1076 domain-containing protein, at 297,014 to 297,643 nleG6-2 MCAODC_16950: nleG2-3 - DUF1076 domain-containing protein, at 297,716 to 298,291 nleG2-3 MCAODC_16955: MCAODC_16955 - phage tail protein, at 298,405 to 298,674 _16955 MCAODC_16960: MCAODC_16960 - Tail fiber protein, at 298,676 to 299,989 _16960 Position (kb) 298 299Strain fitness (log2 ratio) -1 0 1 2at 298.055 kb on + strand, within nleG2-3at 298.091 kb on - strand, within nleG2-3at 298.157 kb on - strand, within nleG2-3at 298.327 kb on + strandat 298.327 kb on + strandat 298.331 kb on + strandat 298.332 kb on - strandat 298.337 kb on + strandat 298.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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298,055 + nleG2-3 MCAODC_16950 0.59 +0.3
298,091 - nleG2-3 MCAODC_16950 0.65 +1.9
298,157 - nleG2-3 MCAODC_16950 0.77 -0.0
298,327 + +1.5
298,327 + -0.5
298,331 + +0.5
298,332 - +0.9
298,337 + +1.3
298,353 + +2.5

Or see this region's nucleotide sequence