Strain Fitness in Escherichia coli ECRC101 around MCAODC_16155

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntynbE and MCAODC_16150 overlap by 4 nucleotidesMCAODC_16150 and ydbL are separated by 7 nucleotidesydbL and MCAODC_16160 are separated by 413 nucleotides MCAODC_16145: ynbE - YdbH family protein, at 118,116 to 120,755 ynbE MCAODC_16150: MCAODC_16150 - YnbE family lipoprotein, at 120,752 to 120,937 _16150 MCAODC_16155: ydbL - DUF1318 domain-containing protein, at 120,945 to 121,268 ydbL MCAODC_16160: MCAODC_16160 - surface-exposed virulence protein BigA, at 121,682 to 124,717 _16160 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 119.996 kb on + strand, within ynbEat 120.229 kb on + strand, within ynbEat 120.229 kb on + strand, within ynbEat 120.229 kb on + strand, within ynbEat 120.233 kb on + strand, within ynbEat 120.234 kb on - strand, within ynbEat 120.320 kb on + strand, within ynbEat 120.461 kb on + strand, within ynbEat 120.536 kb on + strandat 120.618 kb on + strandat 120.787 kb on + strand, within MCAODC_16150at 120.851 kb on - strand, within MCAODC_16150at 120.965 kb on - strandat 121.160 kb on + strand, within ydbLat 121.161 kb on - strand, within ydbLat 121.620 kb on + strandat 121.783 kb on + strandat 121.783 kb on + strandat 121.934 kb on - strandat 121.944 kb on + strandat 122.263 kb on + strand, within MCAODC_16160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
119,996 + ynbE MCAODC_16145 0.71 -1.9
120,229 + ynbE MCAODC_16145 0.80 -0.9
120,229 + ynbE MCAODC_16145 0.80 -0.2
120,229 + ynbE MCAODC_16145 0.80 -0.8
120,233 + ynbE MCAODC_16145 0.80 +0.8
120,234 - ynbE MCAODC_16145 0.80 +1.8
120,320 + ynbE MCAODC_16145 0.83 +0.2
120,461 + ynbE MCAODC_16145 0.89 -1.0
120,536 + +0.2
120,618 + -1.8
120,787 + MCAODC_16150 0.19 +0.2
120,851 - MCAODC_16150 0.53 -0.2
120,965 - -0.4
121,160 + ydbL MCAODC_16155 0.66 -1.0
121,161 - ydbL MCAODC_16155 0.67 +0.2
121,620 + -1.3
121,783 + +1.8
121,783 + +1.6
121,934 - +1.3
121,944 + +2.1
122,263 + MCAODC_16160 0.19 +0.4

Or see this region's nucleotide sequence