Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_15900 and ugpA are separated by 20 nucleotides ugpA and ycjP overlap by 14 nucleotides ycjP and ycjQ are separated by 30 nucleotides
MCAODC_15900: MCAODC_15900 - ABC transporter substrate-binding protein, at 70,390 to 71,004
_15900
MCAODC_15905: ugpA - sugar ABC transporter permease, at 71,025 to 71,906
ugpA
MCAODC_15910: ycjP - Inner membrane ABC transporter permease protein YcjP, at 71,893 to 72,735
ycjP
MCAODC_15915: ycjQ - D-guloside 3-dehydrogenase, at 72,766 to 73,818
ycjQ
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 70.920 kb on + strand, within MCAODC_15900 at 70.931 kb on + strand, within MCAODC_15900 at 71.089 kb on + strand at 71.090 kb on - strand at 71.093 kb on - strand at 71.093 kb on - strand at 71.202 kb on + strand, within ugpA at 71.202 kb on + strand, within ugpA at 71.202 kb on + strand, within ugpA at 71.202 kb on + strand, within ugpA at 71.202 kb on + strand, within ugpA at 71.203 kb on - strand, within ugpA at 71.211 kb on - strand, within ugpA at 71.260 kb on - strand, within ugpA at 71.370 kb on + strand, within ugpA at 71.374 kb on + strand, within ugpA at 71.384 kb on + strand, within ugpA at 71.409 kb on + strand, within ugpA at 71.409 kb on + strand, within ugpA at 71.470 kb on - strand, within ugpA at 71.721 kb on + strand, within ugpA at 71.721 kb on + strand, within ugpA at 71.722 kb on - strand, within ugpA at 72.067 kb on + strand, within ycjP at 72.067 kb on + strand, within ycjP at 72.068 kb on - strand, within ycjP at 72.068 kb on - strand, within ycjP at 72.068 kb on - strand, within ycjP at 72.109 kb on + strand, within ycjP at 72.110 kb on - strand, within ycjP at 72.181 kb on + strand, within ycjP at 72.236 kb on - strand, within ycjP at 72.244 kb on + strand, within ycjP at 72.244 kb on + strand, within ycjP at 72.244 kb on + strand, within ycjP at 72.245 kb on - strand, within ycjP at 72.246 kb on + strand, within ycjP at 72.246 kb on + strand, within ycjP at 72.246 kb on + strand, within ycjP at 72.246 kb on + strand, within ycjP at 72.246 kb on + strand, within ycjP at 72.247 kb on - strand, within ycjP at 72.247 kb on - strand, within ycjP at 72.307 kb on + strand, within ycjP at 72.307 kb on + strand, within ycjP at 72.370 kb on - strand, within ycjP at 72.513 kb on + strand, within ycjP at 72.513 kb on + strand, within ycjP at 72.616 kb on + strand, within ycjP at 72.672 kb on + strand at 72.672 kb on + strand at 72.672 kb on + strand at 72.672 kb on + strand at 72.672 kb on + strand at 72.672 kb on + strand at 72.672 kb on + strand at 72.673 kb on - strand at 72.673 kb on - strand at 72.673 kb on - strand at 72.676 kb on + strand at 72.677 kb on - strand at 72.751 kb on + strand at 72.763 kb on + strand at 72.764 kb on - strand at 72.779 kb on + strand at 73.080 kb on - strand, within ycjQ at 73.129 kb on - strand, within ycjQ at 73.132 kb on + strand, within ycjQ at 73.132 kb on + strand, within ycjQ at 73.247 kb on + strand, within ycjQ at 73.319 kb on + strand, within ycjQ at 73.335 kb on + strand, within ycjQ at 73.353 kb on + strand, within ycjQ at 73.407 kb on - strand, within ycjQ at 73.663 kb on - strand, within ycjQ at 73.699 kb on + strand, within ycjQ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 70,920 + MCAODC_15900 0.86 +0.2 70,931 + MCAODC_15900 0.88 -0.2 71,089 + +1.0 71,090 - +0.8 71,093 - +0.8 71,093 - -0.3 71,202 + ugpA MCAODC_15905 0.20 -0.4 71,202 + ugpA MCAODC_15905 0.20 +0.5 71,202 + ugpA MCAODC_15905 0.20 -0.0 71,202 + ugpA MCAODC_15905 0.20 -1.0 71,202 + ugpA MCAODC_15905 0.20 -0.6 71,203 - ugpA MCAODC_15905 0.20 -0.8 71,211 - ugpA MCAODC_15905 0.21 +2.4 71,260 - ugpA MCAODC_15905 0.27 +0.3 71,370 + ugpA MCAODC_15905 0.39 +0.5 71,374 + ugpA MCAODC_15905 0.40 -0.2 71,384 + ugpA MCAODC_15905 0.41 -0.8 71,409 + ugpA MCAODC_15905 0.44 +0.4 71,409 + ugpA MCAODC_15905 0.44 +1.8 71,470 - ugpA MCAODC_15905 0.50 +0.8 71,721 + ugpA MCAODC_15905 0.79 -1.2 71,721 + ugpA MCAODC_15905 0.79 -0.2 71,722 - ugpA MCAODC_15905 0.79 +2.8 72,067 + ycjP MCAODC_15910 0.21 -0.1 72,067 + ycjP MCAODC_15910 0.21 -0.5 72,068 - ycjP MCAODC_15910 0.21 -1.0 72,068 - ycjP MCAODC_15910 0.21 -1.1 72,068 - ycjP MCAODC_15910 0.21 -1.4 72,109 + ycjP MCAODC_15910 0.26 +0.2 72,110 - ycjP MCAODC_15910 0.26 +0.5 72,181 + ycjP MCAODC_15910 0.34 +1.4 72,236 - ycjP MCAODC_15910 0.41 -0.2 72,244 + ycjP MCAODC_15910 0.42 +0.5 72,244 + ycjP MCAODC_15910 0.42 -0.8 72,244 + ycjP MCAODC_15910 0.42 -1.7 72,245 - ycjP MCAODC_15910 0.42 -0.2 72,246 + ycjP MCAODC_15910 0.42 +3.1 72,246 + ycjP MCAODC_15910 0.42 -0.2 72,246 + ycjP MCAODC_15910 0.42 +0.8 72,246 + ycjP MCAODC_15910 0.42 +0.2 72,246 + ycjP MCAODC_15910 0.42 -0.4 72,247 - ycjP MCAODC_15910 0.42 +1.8 72,247 - ycjP MCAODC_15910 0.42 -0.8 72,307 + ycjP MCAODC_15910 0.49 -0.0 72,307 + ycjP MCAODC_15910 0.49 -0.8 72,370 - ycjP MCAODC_15910 0.57 +0.8 72,513 + ycjP MCAODC_15910 0.74 -2.4 72,513 + ycjP MCAODC_15910 0.74 +0.8 72,616 + ycjP MCAODC_15910 0.86 -0.2 72,672 + -1.5 72,672 + +0.5 72,672 + -0.0 72,672 + +0.8 72,672 + -0.2 72,672 + +0.8 72,672 + -0.1 72,673 - -1.4 72,673 - -0.0 72,673 - +1.3 72,676 + +1.8 72,677 - +0.5 72,751 + +1.2 72,763 + -1.5 72,764 - -0.8 72,779 + -0.4 73,080 - ycjQ MCAODC_15915 0.30 -1.1 73,129 - ycjQ MCAODC_15915 0.34 +0.2 73,132 + ycjQ MCAODC_15915 0.35 -1.7 73,132 + ycjQ MCAODC_15915 0.35 +0.8 73,247 + ycjQ MCAODC_15915 0.46 +0.5 73,319 + ycjQ MCAODC_15915 0.53 +1.1 73,335 + ycjQ MCAODC_15915 0.54 +0.2 73,353 + ycjQ MCAODC_15915 0.56 -0.5 73,407 - ycjQ MCAODC_15915 0.61 +0.1 73,663 - ycjQ MCAODC_15915 0.85 +0.8 73,699 + ycjQ MCAODC_15915 0.89 +0.5
Or see this region's nucleotide sequence