Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_15215 and rfaB overlap by 1 nucleotides
MCAODC_15215: MCAODC_15215 - carbohydrate transporter, at 27,799 to 28,590
_15215
MCAODC_15220: rfaB - glycosyl transferase, at 28,590 to 29,696
rfaB
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 26.876 kb on + strand at 26.909 kb on - strand at 27.008 kb on + strand at 27.009 kb on - strand at 27.050 kb on + strand at 27.051 kb on - strand at 27.069 kb on - strand at 27.076 kb on - strand at 27.103 kb on + strand at 27.103 kb on + strand at 27.104 kb on - strand at 27.106 kb on + strand at 27.106 kb on + strand at 27.107 kb on - strand at 27.107 kb on - strand at 27.107 kb on - strand at 27.110 kb on + strand at 27.110 kb on + strand at 27.111 kb on - strand at 27.112 kb on + strand at 27.113 kb on - strand at 27.206 kb on + strand at 27.248 kb on + strand at 27.248 kb on + strand at 27.248 kb on + strand at 27.249 kb on - strand at 27.270 kb on - strand at 27.273 kb on + strand at 27.273 kb on + strand at 27.274 kb on - strand at 27.281 kb on - strand at 27.300 kb on + strand at 27.301 kb on - strand at 27.301 kb on - strand at 27.301 kb on - strand at 27.301 kb on - strand at 27.303 kb on + strand at 27.303 kb on + strand at 27.304 kb on - strand at 27.304 kb on - strand at 27.333 kb on + strand at 27.333 kb on + strand at 27.334 kb on - strand at 27.340 kb on + strand at 27.405 kb on - strand at 27.467 kb on + strand at 27.616 kb on + strand at 27.682 kb on + strand at 27.682 kb on + strand at 27.683 kb on - strand at 27.685 kb on + strand at 27.701 kb on - strand at 27.704 kb on + strand at 27.704 kb on + strand at 27.705 kb on - strand at 27.750 kb on - strand at 27.803 kb on - strand at 27.883 kb on - strand, within MCAODC_15215 at 28.021 kb on + strand, within MCAODC_15215 at 28.021 kb on + strand, within MCAODC_15215 at 28.023 kb on + strand, within MCAODC_15215 at 28.039 kb on - strand, within MCAODC_15215 at 28.076 kb on + strand, within MCAODC_15215 at 28.076 kb on + strand, within MCAODC_15215 at 28.077 kb on - strand, within MCAODC_15215 at 28.077 kb on - strand, within MCAODC_15215 at 28.077 kb on - strand, within MCAODC_15215 at 28.080 kb on + strand, within MCAODC_15215 at 28.080 kb on + strand, within MCAODC_15215 at 28.080 kb on + strand, within MCAODC_15215 at 28.081 kb on - strand, within MCAODC_15215 at 28.228 kb on - strand, within MCAODC_15215 at 28.251 kb on - strand, within MCAODC_15215 at 28.287 kb on + strand, within MCAODC_15215 at 28.287 kb on + strand, within MCAODC_15215 at 28.333 kb on - strand, within MCAODC_15215 at 28.333 kb on - strand, within MCAODC_15215 at 28.364 kb on - strand, within MCAODC_15215 at 28.364 kb on - strand, within MCAODC_15215 at 28.364 kb on - strand, within MCAODC_15215 at 28.365 kb on + strand, within MCAODC_15215 at 28.366 kb on - strand, within MCAODC_15215 at 28.366 kb on - strand, within MCAODC_15215 at 28.375 kb on + strand, within MCAODC_15215 at 28.377 kb on + strand, within MCAODC_15215 at 28.378 kb on - strand, within MCAODC_15215 at 28.378 kb on - strand, within MCAODC_15215 at 28.408 kb on + strand, within MCAODC_15215 at 28.409 kb on - strand, within MCAODC_15215 at 28.409 kb on - strand, within MCAODC_15215 at 28.409 kb on - strand, within MCAODC_15215 at 28.412 kb on + strand, within MCAODC_15215 at 28.412 kb on + strand, within MCAODC_15215 at 28.412 kb on + strand, within MCAODC_15215 at 28.413 kb on - strand, within MCAODC_15215 at 28.413 kb on - strand, within MCAODC_15215 at 28.413 kb on - strand, within MCAODC_15215 at 28.413 kb on - strand, within MCAODC_15215 at 28.413 kb on - strand, within MCAODC_15215 at 28.414 kb on + strand, within MCAODC_15215 at 28.415 kb on - strand, within MCAODC_15215 at 28.416 kb on + strand, within MCAODC_15215 at 28.416 kb on + strand, within MCAODC_15215 at 28.417 kb on - strand, within MCAODC_15215 at 28.471 kb on - strand, within MCAODC_15215 at 28.526 kb on - strand at 28.527 kb on + strand at 28.527 kb on + strand at 28.527 kb on + strand at 28.528 kb on - strand at 28.584 kb on + strand at 28.588 kb on + strand at 28.589 kb on - strand at 28.625 kb on + strand at 28.625 kb on + strand at 28.693 kb on + strand at 28.694 kb on - strand at 28.715 kb on + strand, within rfaB at 28.761 kb on - strand, within rfaB at 28.851 kb on - strand, within rfaB at 28.865 kb on + strand, within rfaB at 28.865 kb on + strand, within rfaB at 28.865 kb on + strand, within rfaB at 28.865 kb on + strand, within rfaB at 28.866 kb on - strand, within rfaB at 28.866 kb on - strand, within rfaB at 28.866 kb on - strand, within rfaB at 28.868 kb on + strand, within rfaB at 28.868 kb on + strand, within rfaB at 28.868 kb on + strand, within rfaB at 28.868 kb on + strand, within rfaB at 28.868 kb on + strand, within rfaB at 28.868 kb on + strand, within rfaB at 28.868 kb on + strand, within rfaB at 28.868 kb on + strand, within rfaB at 28.868 kb on + strand, within rfaB at 28.869 kb on - strand, within rfaB at 28.869 kb on - strand, within rfaB at 28.869 kb on - strand, within rfaB at 28.869 kb on - strand, within rfaB at 28.869 kb on - strand, within rfaB at 28.869 kb on - strand, within rfaB at 28.870 kb on + strand, within rfaB at 28.870 kb on + strand, within rfaB at 28.870 kb on + strand, within rfaB at 28.870 kb on + strand, within rfaB at 28.870 kb on + strand, within rfaB at 28.870 kb on + strand, within rfaB at 28.870 kb on + strand, within rfaB at 28.871 kb on - strand, within rfaB at 28.871 kb on - strand, within rfaB at 28.871 kb on - strand, within rfaB at 28.892 kb on - strand, within rfaB at 28.892 kb on - strand, within rfaB at 28.892 kb on - strand, within rfaB at 28.892 kb on - strand, within rfaB at 28.940 kb on + strand, within rfaB at 28.941 kb on - strand, within rfaB at 28.966 kb on - strand, within rfaB at 28.966 kb on - strand, within rfaB at 28.991 kb on + strand, within rfaB at 28.991 kb on + strand, within rfaB at 28.991 kb on + strand, within rfaB at 29.081 kb on + strand, within rfaB at 29.111 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.170 kb on + strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.171 kb on - strand, within rfaB at 29.206 kb on + strand, within rfaB at 29.207 kb on - strand, within rfaB at 29.212 kb on - strand, within rfaB at 29.212 kb on - strand, within rfaB at 29.212 kb on - strand, within rfaB at 29.275 kb on - strand, within rfaB at 29.330 kb on - strand, within rfaB at 29.414 kb on + strand, within rfaB at 29.415 kb on - strand, within rfaB at 29.419 kb on + strand, within rfaB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 26,876 + -1.1 26,909 - +0.8 27,008 + -0.2 27,009 - +0.0 27,050 + -0.7 27,051 - +0.6 27,069 - +0.2 27,076 - +0.3 27,103 + -0.0 27,103 + +0.2 27,104 - -1.9 27,106 + -2.1 27,106 + -0.7 27,107 - +0.8 27,107 - -1.3 27,107 - +0.1 27,110 + -1.4 27,110 + +2.4 27,111 - +0.8 27,112 + +0.6 27,113 - -1.0 27,206 + -0.3 27,248 + -0.2 27,248 + -0.3 27,248 + +0.5 27,249 - +0.6 27,270 - +1.4 27,273 + -0.7 27,273 + -1.2 27,274 - -2.1 27,281 - -0.4 27,300 + -1.8 27,301 - +1.6 27,301 - -2.0 27,301 - +1.3 27,301 - +1.0 27,303 + +0.0 27,303 + -1.1 27,304 - -1.4 27,304 - -1.1 27,333 + -0.4 27,333 + +0.2 27,334 - +0.2 27,340 + -0.2 27,405 - -0.2 27,467 + -1.3 27,616 + +0.4 27,682 + +0.7 27,682 + -0.5 27,683 - +4.6 27,685 + -1.5 27,701 - +0.6 27,704 + +0.6 27,704 + -0.4 27,705 - -0.0 27,750 - -2.1 27,803 - -0.6 27,883 - MCAODC_15215 0.11 +1.0 28,021 + MCAODC_15215 0.28 -0.9 28,021 + MCAODC_15215 0.28 +1.0 28,023 + MCAODC_15215 0.28 -0.5 28,039 - MCAODC_15215 0.30 +0.0 28,076 + MCAODC_15215 0.35 -0.9 28,076 + MCAODC_15215 0.35 +0.5 28,077 - MCAODC_15215 0.35 +0.5 28,077 - MCAODC_15215 0.35 -0.1 28,077 - MCAODC_15215 0.35 +1.3 28,080 + MCAODC_15215 0.35 +0.6 28,080 + MCAODC_15215 0.35 +1.0 28,080 + MCAODC_15215 0.35 -0.3 28,081 - MCAODC_15215 0.36 +0.6 28,228 - MCAODC_15215 0.54 +0.2 28,251 - MCAODC_15215 0.57 +0.5 28,287 + MCAODC_15215 0.62 -1.0 28,287 + MCAODC_15215 0.62 +1.8 28,333 - MCAODC_15215 0.67 +0.3 28,333 - MCAODC_15215 0.67 -0.6 28,364 - MCAODC_15215 0.71 -1.0 28,364 - MCAODC_15215 0.71 +0.2 28,364 - MCAODC_15215 0.71 -0.6 28,365 + MCAODC_15215 0.71 -0.8 28,366 - MCAODC_15215 0.72 -0.1 28,366 - MCAODC_15215 0.72 -1.3 28,375 + MCAODC_15215 0.73 +0.3 28,377 + MCAODC_15215 0.73 +0.5 28,378 - MCAODC_15215 0.73 +1.8 28,378 - MCAODC_15215 0.73 +1.3 28,408 + MCAODC_15215 0.77 -1.8 28,409 - MCAODC_15215 0.77 -1.6 28,409 - MCAODC_15215 0.77 -0.8 28,409 - MCAODC_15215 0.77 +0.3 28,412 + MCAODC_15215 0.77 +1.7 28,412 + MCAODC_15215 0.77 +0.1 28,412 + MCAODC_15215 0.77 -0.5 28,413 - MCAODC_15215 0.78 +0.3 28,413 - MCAODC_15215 0.78 -2.7 28,413 - MCAODC_15215 0.78 -0.4 28,413 - MCAODC_15215 0.78 -0.3 28,413 - MCAODC_15215 0.78 -2.6 28,414 + MCAODC_15215 0.78 -0.4 28,415 - MCAODC_15215 0.78 -0.6 28,416 + MCAODC_15215 0.78 +1.5 28,416 + MCAODC_15215 0.78 +1.0 28,417 - MCAODC_15215 0.78 -1.8 28,471 - MCAODC_15215 0.85 +0.5 28,526 - +0.3 28,527 + -0.7 28,527 + -0.4 28,527 + +1.5 28,528 - -1.1 28,584 + -2.4 28,588 + -2.0 28,589 - +0.0 28,625 + +3.6 28,625 + +1.0 28,693 + -0.0 28,694 - +0.2 28,715 + rfaB MCAODC_15220 0.11 -0.8 28,761 - rfaB MCAODC_15220 0.15 +1.1 28,851 - rfaB MCAODC_15220 0.24 +1.0 28,865 + rfaB MCAODC_15220 0.25 -0.1 28,865 + rfaB MCAODC_15220 0.25 +0.4 28,865 + rfaB MCAODC_15220 0.25 +0.3 28,865 + rfaB MCAODC_15220 0.25 -0.5 28,866 - rfaB MCAODC_15220 0.25 +1.4 28,866 - rfaB MCAODC_15220 0.25 +0.1 28,866 - rfaB MCAODC_15220 0.25 +0.2 28,868 + rfaB MCAODC_15220 0.25 +0.4 28,868 + rfaB MCAODC_15220 0.25 -1.8 28,868 + rfaB MCAODC_15220 0.25 -1.2 28,868 + rfaB MCAODC_15220 0.25 -1.1 28,868 + rfaB MCAODC_15220 0.25 +0.2 28,868 + rfaB MCAODC_15220 0.25 +0.3 28,868 + rfaB MCAODC_15220 0.25 -0.3 28,868 + rfaB MCAODC_15220 0.25 -0.8 28,868 + rfaB MCAODC_15220 0.25 -0.4 28,869 - rfaB MCAODC_15220 0.25 -0.7 28,869 - rfaB MCAODC_15220 0.25 -0.6 28,869 - rfaB MCAODC_15220 0.25 +0.4 28,869 - rfaB MCAODC_15220 0.25 +0.6 28,869 - rfaB MCAODC_15220 0.25 -0.0 28,869 - rfaB MCAODC_15220 0.25 +0.6 28,870 + rfaB MCAODC_15220 0.25 -1.2 28,870 + rfaB MCAODC_15220 0.25 -0.3 28,870 + rfaB MCAODC_15220 0.25 +0.8 28,870 + rfaB MCAODC_15220 0.25 +1.3 28,870 + rfaB MCAODC_15220 0.25 +0.7 28,870 + rfaB MCAODC_15220 0.25 +0.6 28,870 + rfaB MCAODC_15220 0.25 -0.2 28,871 - rfaB MCAODC_15220 0.25 -0.1 28,871 - rfaB MCAODC_15220 0.25 +1.0 28,871 - rfaB MCAODC_15220 0.25 -0.4 28,892 - rfaB MCAODC_15220 0.27 +1.2 28,892 - rfaB MCAODC_15220 0.27 -1.2 28,892 - rfaB MCAODC_15220 0.27 -0.9 28,892 - rfaB MCAODC_15220 0.27 +0.2 28,940 + rfaB MCAODC_15220 0.32 +0.3 28,941 - rfaB MCAODC_15220 0.32 +0.0 28,966 - rfaB MCAODC_15220 0.34 -1.0 28,966 - rfaB MCAODC_15220 0.34 -0.9 28,991 + rfaB MCAODC_15220 0.36 -0.4 28,991 + rfaB MCAODC_15220 0.36 +0.1 28,991 + rfaB MCAODC_15220 0.36 +0.7 29,081 + rfaB MCAODC_15220 0.44 +1.0 29,111 + rfaB MCAODC_15220 0.47 -1.0 29,170 + rfaB MCAODC_15220 0.52 -1.2 29,170 + rfaB MCAODC_15220 0.52 +0.9 29,170 + rfaB MCAODC_15220 0.52 -0.2 29,170 + rfaB MCAODC_15220 0.52 -0.2 29,170 + rfaB MCAODC_15220 0.52 -0.7 29,170 + rfaB MCAODC_15220 0.52 -1.0 29,170 + rfaB MCAODC_15220 0.52 -2.1 29,170 + rfaB MCAODC_15220 0.52 -2.3 29,170 + rfaB MCAODC_15220 0.52 -0.2 29,170 + rfaB MCAODC_15220 0.52 +0.3 29,171 - rfaB MCAODC_15220 0.52 -0.5 29,171 - rfaB MCAODC_15220 0.52 -2.8 29,171 - rfaB MCAODC_15220 0.52 -0.9 29,171 - rfaB MCAODC_15220 0.52 -1.9 29,171 - rfaB MCAODC_15220 0.52 -0.4 29,171 - rfaB MCAODC_15220 0.52 -0.6 29,171 - rfaB MCAODC_15220 0.52 -0.2 29,171 - rfaB MCAODC_15220 0.52 -2.4 29,171 - rfaB MCAODC_15220 0.52 -1.0 29,171 - rfaB MCAODC_15220 0.52 -0.3 29,171 - rfaB MCAODC_15220 0.52 +0.6 29,206 + rfaB MCAODC_15220 0.56 -3.1 29,207 - rfaB MCAODC_15220 0.56 +0.0 29,212 - rfaB MCAODC_15220 0.56 -1.9 29,212 - rfaB MCAODC_15220 0.56 +0.2 29,212 - rfaB MCAODC_15220 0.56 +0.8 29,275 - rfaB MCAODC_15220 0.62 +2.6 29,330 - rfaB MCAODC_15220 0.67 -0.2 29,414 + rfaB MCAODC_15220 0.74 +2.2 29,415 - rfaB MCAODC_15220 0.75 +0.2 29,419 + rfaB MCAODC_15220 0.75 -0.0
Or see this region's nucleotide sequence