Strain Fitness in Escherichia coli ECRC101 around MCAODC_12060

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
2,385,128	+				-0.8
2,385,147	-				-1.1
2,385,153	+				-0.3
2,385,161	+				+0.3
2,385,161	+				-1.8
2,385,204	-	yphF	MCAODC_12055	0.11	-0.7
2,385,205	+	yphF	MCAODC_12055	0.11	+0.5
2,385,281	+	yphF	MCAODC_12055	0.19	-0.3
2,385,287	+	yphF	MCAODC_12055	0.19	-2.0
2,385,287	+	yphF	MCAODC_12055	0.19	-0.1
2,385,287	+	yphF	MCAODC_12055	0.19	-0.7
2,385,312	+	yphF	MCAODC_12055	0.22	+0.6
2,385,313	-	yphF	MCAODC_12055	0.22	+1.1
2,385,369	+	yphF	MCAODC_12055	0.28	-1.1
2,385,459	+	yphF	MCAODC_12055	0.37	-0.8
2,385,460	-	yphF	MCAODC_12055	0.37	-0.1
2,385,480	+	yphF	MCAODC_12055	0.39	-0.4
2,385,497	-	yphF	MCAODC_12055	0.41	+0.9
2,385,812	+	yphF	MCAODC_12055	0.73	-2.1
2,385,918	+	yphF	MCAODC_12055	0.83	-0.1
2,385,970	-	yphF	MCAODC_12055	0.89	+1.3
2,385,976	-	yphF	MCAODC_12055	0.89	+0.6
2,386,021	+				-1.4
2,386,023	+				-0.1
2,386,102	+				+0.2
2,386,103	-				+1.2
2,386,154	-				-1.7
2,386,270	+	ccmA	MCAODC_12060	0.11	+0.3
2,386,339	+	ccmA	MCAODC_12060	0.16	+0.6
2,386,339	+	ccmA	MCAODC_12060	0.16	-0.4
2,386,339	+	ccmA	MCAODC_12060	0.16	+0.7
2,386,340	-	ccmA	MCAODC_12060	0.16	-0.4
2,386,392	+	ccmA	MCAODC_12060	0.19	-0.9
2,386,393	-	ccmA	MCAODC_12060	0.19	-1.1
2,386,393	-	ccmA	MCAODC_12060	0.19	-1.7
2,386,393	-	ccmA	MCAODC_12060	0.19	+0.3
2,386,393	-	ccmA	MCAODC_12060	0.19	-1.8
2,386,393	-	ccmA	MCAODC_12060	0.19	-1.6
2,386,503	+	ccmA	MCAODC_12060	0.26	+0.6
2,386,504	-	ccmA	MCAODC_12060	0.27	-2.6
2,386,525	+	ccmA	MCAODC_12060	0.28	-2.7
2,386,525	+	ccmA	MCAODC_12060	0.28	-0.4
2,386,551	+	ccmA	MCAODC_12060	0.30	-1.0
2,386,552	-	ccmA	MCAODC_12060	0.30	-0.4
2,386,552	-	ccmA	MCAODC_12060	0.30	-0.6
2,386,552	-	ccmA	MCAODC_12060	0.30	-1.3
2,386,564	+	ccmA	MCAODC_12060	0.30	+0.4
2,386,712	+	ccmA	MCAODC_12060	0.40	+0.2
2,386,713	-	ccmA	MCAODC_12060	0.40	+0.4
2,386,713	-	ccmA	MCAODC_12060	0.40	+0.9
2,386,713	-	ccmA	MCAODC_12060	0.40	+3.5
2,386,822	+	ccmA	MCAODC_12060	0.48	+0.5
2,386,823	-	ccmA	MCAODC_12060	0.48	+1.8
2,386,823	-	ccmA	MCAODC_12060	0.48	-1.4
2,386,823	-	ccmA	MCAODC_12060	0.48	-1.3
2,386,823	-	ccmA	MCAODC_12060	0.48	+0.5
2,386,858	+	ccmA	MCAODC_12060	0.50	+1.3
2,386,859	-	ccmA	MCAODC_12060	0.50	-0.7
2,386,951	+	ccmA	MCAODC_12060	0.56	+0.3
2,386,957	-	ccmA	MCAODC_12060	0.56	-1.0
2,386,957	-	ccmA	MCAODC_12060	0.56	+0.6
2,386,957	-	ccmA	MCAODC_12060	0.56	-1.2
2,387,042	+	ccmA	MCAODC_12060	0.62	+0.2
2,387,042	+	ccmA	MCAODC_12060	0.62	+0.7
2,387,043	-	ccmA	MCAODC_12060	0.62	+1.5
2,387,126	-	ccmA	MCAODC_12060	0.68	-1.3
2,387,126	-	ccmA	MCAODC_12060	0.68	-1.0
2,387,126	-	ccmA	MCAODC_12060	0.68	-0.4
2,387,341	-	ccmA	MCAODC_12060	0.82	-1.3
2,387,361	-	ccmA	MCAODC_12060	0.83	+1.3
2,387,433	-	ccmA	MCAODC_12060	0.88	+0.6
2,387,437	+	ccmA	MCAODC_12060	0.88	+0.3
2,387,437	+	ccmA	MCAODC_12060	0.88	+1.6
2,387,438	-	ccmA	MCAODC_12060	0.88	-0.2
2,387,529	+				+0.6
2,387,532	+				+0.3
2,387,532	+				+1.2
2,387,532	+				+0.4
2,387,533	-				+0.7
2,387,656	-				+1.9
2,387,707	+				+0.9
2,387,708	-				-2.7
2,387,710	+				-1.4
2,387,710	+				-1.4
2,387,780	-	yphD	MCAODC_12065	0.14	-0.3
2,387,857	+	yphD	MCAODC_12065	0.22	+2.3
2,387,860	+	yphD	MCAODC_12065	0.22	+1.3
2,387,861	-	yphD	MCAODC_12065	0.22	-1.5
2,387,913	+	yphD	MCAODC_12065	0.27	+0.1
2,387,913	+	yphD	MCAODC_12065	0.27	+0.8
2,387,913	+	yphD	MCAODC_12065	0.27	+0.2
2,388,287	-	yphD	MCAODC_12065	0.65	+0.4
2,388,289	+	yphD	MCAODC_12065	0.65	-0.1
2,388,290	-	yphD	MCAODC_12065	0.65	-1.6
2,388,290	-	yphD	MCAODC_12065	0.65	-0.5
2,388,313	+	yphD	MCAODC_12065	0.67	-0.9
2,388,313	+	yphD	MCAODC_12065	0.67	+1.6
2,388,313	+	yphD	MCAODC_12065	0.67	+1.9
2,388,314	-	yphD	MCAODC_12065	0.68	-0.1
2,388,320	-	yphD	MCAODC_12065	0.68	-0.1
2,388,502	+	yphD	MCAODC_12065	0.86	-0.2
2,388,503	-	yphD	MCAODC_12065	0.86	-0.7
2,388,599	-				+1.2