Strain Fitness in Escherichia coli ECRC101 around MCAODC_11590

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_11575 and MCAODC_11580 are separated by 4 nucleotidesMCAODC_11580 and rrrD are separated by 42 nucleotidesrrrD and insE are separated by 75 nucleotidesinsE and tnpB overlap by 4 nucleotidestnpB and MCAODC_11600 are separated by 49 nucleotides MCAODC_11575: MCAODC_11575 - holin, at 2,300,886 to 2,301,101 _11575 MCAODC_11580: MCAODC_11580 - YdfR family protein, at 2,301,106 to 2,301,438 _11580 MCAODC_11585: rrrD - lysozyme, at 2,301,481 to 2,301,711 rrrD MCAODC_11590: insE - Transposase InsE and inactivated derivatives, at 2,301,787 to 2,302,167 insE MCAODC_11595: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 2,302,164 to 2,302,511 tnpB MCAODC_11600: MCAODC_11600 - Transposase C of IS166 homeodomain, at 2,302,561 to 2,303,205 _11600 MCAODC_11605: tnp-IS3 - IS3 family transposase, at 2,303,012 to 2,303,899 tnp-IS3 Position (kb) 2301 2302 2303Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2301.441 kb on + strandat 2301.441 kb on + strandat 2301.441 kb on + strandat 2301.441 kb on + strandat 2301.703 kb on - strandat 2302.945 kb on + strand, within MCAODC_11600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
2,301,441 + -0.5
2,301,441 + +1.0
2,301,441 + -3.0
2,301,441 + +1.6
2,301,703 - -0.7
2,302,945 + MCAODC_11600 0.60 +1.9

Or see this region's nucleotide sequence