Strain Fitness in Escherichia coli ECRC101 around MCAODC_10260

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_10255 and MCAODC_10260 are separated by 66 nucleotidesMCAODC_10260 and araC are separated by 345 nucleotides MCAODC_10255: MCAODC_10255 - Glyco-hydro-15 domain-containing protein, at 2,048,264 to 2,049,322 _10255 MCAODC_10260: MCAODC_10260 - GhoT/OrtT family toxin, at 2,049,389 to 2,049,568 _10260 MCAODC_10265: araC - AraC family transcriptional regulator, at 2,049,914 to 2,050,663 araC Position (kb) 2049 2050Strain fitness (log2 ratio) -2 -1 0 1at 2048.401 kb on + strand, within MCAODC_10255at 2048.404 kb on + strand, within MCAODC_10255at 2048.404 kb on + strand, within MCAODC_10255at 2048.405 kb on - strand, within MCAODC_10255at 2048.407 kb on + strand, within MCAODC_10255at 2048.408 kb on - strand, within MCAODC_10255at 2048.408 kb on - strand, within MCAODC_10255at 2048.465 kb on + strand, within MCAODC_10255at 2048.466 kb on - strand, within MCAODC_10255at 2048.622 kb on + strand, within MCAODC_10255at 2048.632 kb on + strand, within MCAODC_10255at 2048.632 kb on + strand, within MCAODC_10255at 2048.690 kb on - strand, within MCAODC_10255at 2049.101 kb on - strand, within MCAODC_10255at 2049.194 kb on + strand, within MCAODC_10255at 2049.195 kb on - strand, within MCAODC_10255at 2049.471 kb on + strand, within MCAODC_10260at 2049.713 kb on + strandat 2049.790 kb on + strandat 2049.933 kb on + strandat 2050.177 kb on + strand, within araCat 2050.465 kb on + strand, within araCat 2050.565 kb on - strand, within araC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,048,401 + MCAODC_10255 0.13 +0.5
2,048,404 + MCAODC_10255 0.13 +0.4
2,048,404 + MCAODC_10255 0.13 -0.6
2,048,405 - MCAODC_10255 0.13 -0.0
2,048,407 + MCAODC_10255 0.14 +0.3
2,048,408 - MCAODC_10255 0.14 +0.7
2,048,408 - MCAODC_10255 0.14 -0.0
2,048,465 + MCAODC_10255 0.19 -0.4
2,048,466 - MCAODC_10255 0.19 +1.0
2,048,622 + MCAODC_10255 0.34 +0.2
2,048,632 + MCAODC_10255 0.35 -0.2
2,048,632 + MCAODC_10255 0.35 -0.4
2,048,690 - MCAODC_10255 0.40 +0.8
2,049,101 - MCAODC_10255 0.79 -0.0
2,049,194 + MCAODC_10255 0.88 -0.9
2,049,195 - MCAODC_10255 0.88 -0.6
2,049,471 + MCAODC_10260 0.46 -0.4
2,049,713 + -0.5
2,049,790 + -0.2
2,049,933 + -1.9
2,050,177 + araC MCAODC_10265 0.35 -0.8
2,050,465 + araC MCAODC_10265 0.73 -1.2
2,050,565 - araC MCAODC_10265 0.87 -0.7

Or see this region's nucleotide sequence