Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihO and ompL are separated by 0 nucleotides ompL and yihN are separated by 90 nucleotides yihN and yihM are separated by 101 nucleotides
MCAODC_04560: yihO - Putative sulfoquinovose importer, at 924,586 to 925,989
yihO
MCAODC_04565: ompL - porin OmpL, at 925,990 to 926,748
ompL
MCAODC_04570: yihN - Inner membrane protein YihN, at 926,839 to 928,104
yihN
MCAODC_04575: yihM - Uncharacterized protein YihM, at 928,206 to 929,186
yihM
Position (kb) 926
927
928
929 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 925.917 kb on + strand at 925.986 kb on - strand at 926.143 kb on + strand, within ompL at 926.144 kb on - strand, within ompL at 926.145 kb on + strand, within ompL at 926.177 kb on + strand, within ompL at 926.178 kb on - strand, within ompL at 926.190 kb on + strand, within ompL at 926.214 kb on + strand, within ompL at 926.215 kb on - strand, within ompL at 926.226 kb on + strand, within ompL at 926.340 kb on + strand, within ompL at 926.385 kb on + strand, within ompL at 926.398 kb on - strand, within ompL at 926.442 kb on + strand, within ompL at 926.447 kb on - strand, within ompL at 926.492 kb on - strand, within ompL at 926.542 kb on - strand, within ompL at 926.564 kb on - strand, within ompL at 926.619 kb on + strand, within ompL at 926.620 kb on - strand, within ompL at 926.640 kb on + strand, within ompL at 926.659 kb on + strand, within ompL at 926.659 kb on + strand, within ompL at 926.659 kb on + strand, within ompL at 926.661 kb on + strand, within ompL at 926.662 kb on - strand, within ompL at 926.679 kb on - strand at 926.679 kb on - strand at 926.737 kb on + strand at 926.738 kb on - strand at 926.824 kb on - strand at 926.824 kb on - strand at 926.836 kb on + strand at 926.840 kb on + strand at 926.840 kb on + strand at 926.868 kb on + strand at 926.868 kb on + strand at 926.868 kb on + strand at 926.868 kb on + strand at 926.869 kb on - strand at 926.869 kb on - strand at 926.877 kb on + strand at 926.880 kb on + strand at 926.881 kb on - strand at 926.896 kb on + strand at 926.954 kb on + strand at 926.988 kb on - strand, within yihN at 926.988 kb on - strand, within yihN at 926.994 kb on - strand, within yihN at 927.090 kb on + strand, within yihN at 927.090 kb on + strand, within yihN at 927.090 kb on + strand, within yihN at 927.117 kb on + strand, within yihN at 927.118 kb on - strand, within yihN at 927.144 kb on + strand, within yihN at 927.144 kb on + strand, within yihN at 927.145 kb on - strand, within yihN at 927.145 kb on - strand, within yihN at 927.145 kb on - strand, within yihN at 927.161 kb on + strand, within yihN at 927.171 kb on + strand, within yihN at 927.190 kb on - strand, within yihN at 927.223 kb on - strand, within yihN at 927.230 kb on + strand, within yihN at 927.230 kb on + strand, within yihN at 927.230 kb on + strand, within yihN at 927.231 kb on - strand, within yihN at 927.235 kb on + strand, within yihN at 927.235 kb on + strand, within yihN at 927.235 kb on + strand, within yihN at 927.235 kb on + strand, within yihN at 927.235 kb on + strand, within yihN at 927.236 kb on - strand, within yihN at 927.236 kb on - strand, within yihN at 927.236 kb on - strand, within yihN at 927.236 kb on - strand, within yihN at 927.236 kb on - strand, within yihN at 927.239 kb on + strand, within yihN at 927.239 kb on + strand, within yihN at 927.240 kb on - strand, within yihN at 927.311 kb on + strand, within yihN at 927.330 kb on - strand, within yihN at 927.355 kb on + strand, within yihN at 927.355 kb on + strand, within yihN at 927.355 kb on + strand, within yihN at 927.355 kb on + strand, within yihN at 927.356 kb on - strand, within yihN at 927.359 kb on + strand, within yihN at 927.359 kb on + strand, within yihN at 927.360 kb on - strand, within yihN at 927.360 kb on - strand, within yihN at 927.360 kb on - strand, within yihN at 927.401 kb on + strand, within yihN at 927.435 kb on + strand, within yihN at 927.445 kb on - strand, within yihN at 927.471 kb on + strand, within yihN at 927.553 kb on - strand, within yihN at 927.555 kb on + strand, within yihN at 927.584 kb on + strand, within yihN at 927.585 kb on - strand, within yihN at 927.603 kb on + strand, within yihN at 927.611 kb on - strand, within yihN at 927.613 kb on + strand, within yihN at 927.614 kb on - strand, within yihN at 927.614 kb on - strand, within yihN at 927.633 kb on + strand, within yihN at 927.633 kb on + strand, within yihN at 927.634 kb on - strand, within yihN at 927.780 kb on + strand, within yihN at 927.781 kb on - strand, within yihN at 927.818 kb on + strand, within yihN at 927.840 kb on - strand, within yihN at 927.884 kb on + strand, within yihN at 927.895 kb on + strand, within yihN at 927.960 kb on + strand, within yihN at 927.960 kb on + strand, within yihN at 927.961 kb on - strand, within yihN at 927.966 kb on + strand, within yihN at 928.036 kb on + strand at 928.075 kb on - strand at 928.148 kb on + strand at 928.179 kb on + strand at 928.179 kb on + strand at 928.251 kb on + strand at 928.373 kb on + strand, within yihM at 928.373 kb on + strand, within yihM at 928.409 kb on - strand, within yihM at 928.409 kb on - strand, within yihM at 928.411 kb on + strand, within yihM at 928.412 kb on - strand, within yihM at 928.436 kb on - strand, within yihM at 928.472 kb on + strand, within yihM at 928.473 kb on - strand, within yihM at 928.473 kb on - strand, within yihM at 928.473 kb on - strand, within yihM at 928.483 kb on - strand, within yihM at 928.485 kb on + strand, within yihM at 928.485 kb on + strand, within yihM at 928.502 kb on + strand, within yihM at 928.502 kb on + strand, within yihM at 928.521 kb on - strand, within yihM at 928.529 kb on + strand, within yihM at 928.529 kb on + strand, within yihM at 928.587 kb on - strand, within yihM at 928.720 kb on - strand, within yihM at 928.765 kb on + strand, within yihM at 928.810 kb on - strand, within yihM at 928.810 kb on - strand, within yihM at 928.810 kb on - strand, within yihM at 928.895 kb on + strand, within yihM at 928.896 kb on - strand, within yihM at 928.931 kb on + strand, within yihM at 928.932 kb on - strand, within yihM at 929.040 kb on + strand, within yihM at 929.040 kb on + strand, within yihM
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 925,917 + -1.5 925,986 - -0.7 926,143 + ompL MCAODC_04565 0.20 -0.5 926,144 - ompL MCAODC_04565 0.20 +2.1 926,145 + ompL MCAODC_04565 0.20 -0.8 926,177 + ompL MCAODC_04565 0.25 +1.4 926,178 - ompL MCAODC_04565 0.25 -0.7 926,190 + ompL MCAODC_04565 0.26 -0.1 926,214 + ompL MCAODC_04565 0.30 +2.1 926,215 - ompL MCAODC_04565 0.30 -1.5 926,226 + ompL MCAODC_04565 0.31 -0.3 926,340 + ompL MCAODC_04565 0.46 +0.1 926,385 + ompL MCAODC_04565 0.52 +0.6 926,398 - ompL MCAODC_04565 0.54 +0.5 926,442 + ompL MCAODC_04565 0.60 -0.7 926,447 - ompL MCAODC_04565 0.60 +1.1 926,492 - ompL MCAODC_04565 0.66 -1.4 926,542 - ompL MCAODC_04565 0.73 +2.1 926,564 - ompL MCAODC_04565 0.76 +0.1 926,619 + ompL MCAODC_04565 0.83 +0.5 926,620 - ompL MCAODC_04565 0.83 -1.2 926,640 + ompL MCAODC_04565 0.86 -0.3 926,659 + ompL MCAODC_04565 0.88 -0.3 926,659 + ompL MCAODC_04565 0.88 -1.6 926,659 + ompL MCAODC_04565 0.88 +2.0 926,661 + ompL MCAODC_04565 0.88 +0.9 926,662 - ompL MCAODC_04565 0.89 -0.7 926,679 - +1.1 926,679 - -0.1 926,737 + -1.0 926,738 - -1.3 926,824 - -0.6 926,824 - -0.2 926,836 + +0.8 926,840 + +0.0 926,840 + +0.3 926,868 + -0.8 926,868 + +2.1 926,868 + -1.8 926,868 + -1.2 926,869 - +0.3 926,869 - +0.1 926,877 + -1.2 926,880 + -0.2 926,881 - -1.0 926,896 + -0.7 926,954 + +0.9 926,988 - yihN MCAODC_04570 0.12 -0.5 926,988 - yihN MCAODC_04570 0.12 -2.7 926,994 - yihN MCAODC_04570 0.12 +0.3 927,090 + yihN MCAODC_04570 0.20 -0.4 927,090 + yihN MCAODC_04570 0.20 +0.1 927,090 + yihN MCAODC_04570 0.20 +0.5 927,117 + yihN MCAODC_04570 0.22 -1.0 927,118 - yihN MCAODC_04570 0.22 +0.1 927,144 + yihN MCAODC_04570 0.24 -1.5 927,144 + yihN MCAODC_04570 0.24 -0.2 927,145 - yihN MCAODC_04570 0.24 -0.0 927,145 - yihN MCAODC_04570 0.24 -0.7 927,145 - yihN MCAODC_04570 0.24 -2.5 927,161 + yihN MCAODC_04570 0.25 +0.1 927,171 + yihN MCAODC_04570 0.26 -0.3 927,190 - yihN MCAODC_04570 0.28 +1.4 927,223 - yihN MCAODC_04570 0.30 +0.5 927,230 + yihN MCAODC_04570 0.31 -0.5 927,230 + yihN MCAODC_04570 0.31 -0.6 927,230 + yihN MCAODC_04570 0.31 +0.0 927,231 - yihN MCAODC_04570 0.31 +0.5 927,235 + yihN MCAODC_04570 0.31 +0.3 927,235 + yihN MCAODC_04570 0.31 -0.1 927,235 + yihN MCAODC_04570 0.31 -0.1 927,235 + yihN MCAODC_04570 0.31 +2.0 927,235 + yihN MCAODC_04570 0.31 +1.5 927,236 - yihN MCAODC_04570 0.31 -1.2 927,236 - yihN MCAODC_04570 0.31 -0.2 927,236 - yihN MCAODC_04570 0.31 -1.0 927,236 - yihN MCAODC_04570 0.31 +0.4 927,236 - yihN MCAODC_04570 0.31 -2.3 927,239 + yihN MCAODC_04570 0.32 +2.1 927,239 + yihN MCAODC_04570 0.32 +0.8 927,240 - yihN MCAODC_04570 0.32 -0.7 927,311 + yihN MCAODC_04570 0.37 +0.5 927,330 - yihN MCAODC_04570 0.39 -1.2 927,355 + yihN MCAODC_04570 0.41 -0.6 927,355 + yihN MCAODC_04570 0.41 -0.4 927,355 + yihN MCAODC_04570 0.41 +0.1 927,355 + yihN MCAODC_04570 0.41 +3.7 927,356 - yihN MCAODC_04570 0.41 -0.6 927,359 + yihN MCAODC_04570 0.41 -0.0 927,359 + yihN MCAODC_04570 0.41 +0.1 927,360 - yihN MCAODC_04570 0.41 -1.3 927,360 - yihN MCAODC_04570 0.41 -0.1 927,360 - yihN MCAODC_04570 0.41 +0.5 927,401 + yihN MCAODC_04570 0.44 -0.5 927,435 + yihN MCAODC_04570 0.47 +0.4 927,445 - yihN MCAODC_04570 0.48 -0.8 927,471 + yihN MCAODC_04570 0.50 -1.0 927,553 - yihN MCAODC_04570 0.56 +0.0 927,555 + yihN MCAODC_04570 0.57 -1.4 927,584 + yihN MCAODC_04570 0.59 +1.0 927,585 - yihN MCAODC_04570 0.59 -0.5 927,603 + yihN MCAODC_04570 0.60 +0.2 927,611 - yihN MCAODC_04570 0.61 -0.5 927,613 + yihN MCAODC_04570 0.61 -0.2 927,614 - yihN MCAODC_04570 0.61 -2.0 927,614 - yihN MCAODC_04570 0.61 -1.5 927,633 + yihN MCAODC_04570 0.63 +0.5 927,633 + yihN MCAODC_04570 0.63 -0.9 927,634 - yihN MCAODC_04570 0.63 -2.2 927,780 + yihN MCAODC_04570 0.74 -0.5 927,781 - yihN MCAODC_04570 0.74 +1.1 927,818 + yihN MCAODC_04570 0.77 -0.8 927,840 - yihN MCAODC_04570 0.79 -0.3 927,884 + yihN MCAODC_04570 0.83 -0.3 927,895 + yihN MCAODC_04570 0.83 -0.5 927,960 + yihN MCAODC_04570 0.89 -0.1 927,960 + yihN MCAODC_04570 0.89 +0.5 927,961 - yihN MCAODC_04570 0.89 +1.3 927,966 + yihN MCAODC_04570 0.89 -1.1 928,036 + +1.1 928,075 - -1.4 928,148 + -0.8 928,179 + -0.7 928,179 + +0.8 928,251 + -0.7 928,373 + yihM MCAODC_04575 0.17 -0.6 928,373 + yihM MCAODC_04575 0.17 -1.3 928,409 - yihM MCAODC_04575 0.21 +0.4 928,409 - yihM MCAODC_04575 0.21 +1.1 928,411 + yihM MCAODC_04575 0.21 -0.5 928,412 - yihM MCAODC_04575 0.21 +0.7 928,436 - yihM MCAODC_04575 0.23 +0.1 928,472 + yihM MCAODC_04575 0.27 -0.3 928,473 - yihM MCAODC_04575 0.27 -0.4 928,473 - yihM MCAODC_04575 0.27 -1.8 928,473 - yihM MCAODC_04575 0.27 +0.5 928,483 - yihM MCAODC_04575 0.28 +2.1 928,485 + yihM MCAODC_04575 0.28 -0.6 928,485 + yihM MCAODC_04575 0.28 -1.4 928,502 + yihM MCAODC_04575 0.30 -0.6 928,502 + yihM MCAODC_04575 0.30 -1.1 928,521 - yihM MCAODC_04575 0.32 +0.7 928,529 + yihM MCAODC_04575 0.33 +0.9 928,529 + yihM MCAODC_04575 0.33 -0.8 928,587 - yihM MCAODC_04575 0.39 +0.1 928,720 - yihM MCAODC_04575 0.52 +0.5 928,765 + yihM MCAODC_04575 0.57 +1.1 928,810 - yihM MCAODC_04575 0.62 +0.5 928,810 - yihM MCAODC_04575 0.62 -1.0 928,810 - yihM MCAODC_04575 0.62 +0.0 928,895 + yihM MCAODC_04575 0.70 +0.1 928,896 - yihM MCAODC_04575 0.70 -0.2 928,931 + yihM MCAODC_04575 0.74 +0.6 928,932 - yihM MCAODC_04575 0.74 +2.7 929,040 + yihM MCAODC_04575 0.85 -0.9 929,040 + yihM MCAODC_04575 0.85 +0.2
Or see this region's nucleotide sequence